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F.M. Kirby Neurobiology Center, Children's Hospital, Harvard Medical School, 300 Longwood Avenue, CLS 13034, Boston, MA 02115, United States.
A fine interplay exists between sensory experience and innate genetic programs leading to the sculpting of neuronal circuits during early brain development. Recent evidence suggests that the dynamic regulation of gene expression through epigenetic mechanisms is at the interface between environmental stimuli and long lasting molecular, cellular and complex behavioral phenotypes acquired during periods of developmental plasticity. Understanding these mechanisms may give insight into the formation of critical periods and provide new strategies for increasing plasticity and adaptive change in adulthood.
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E Aliu, H Anderhub, L A Antonelli, P Antoranz, M Backes, C Baixeras, J A Barrio, H Bartko, D Bastieri, J K Becker, W Bednarek, K Berger, E Bernardini, C Bigongiari, A Biland, R K Bock, G Bonnoli, P Bordas, V Bosch-Ramon, T Bretz, I Britvitch, M Camara, E Carmona, A Chilingarian, S Commichau, J L Contreras, J Cortina, M T Costado, S Covino, V Curtef, F Dazzi, A De Angelis, E De Cea Del Pozo, R de Los Reyes, B De Lotto, M De Maria, F De Sabata, C Delgado Mendez, A Dominguez, D Dorner, M Doro, D Elsässer, M Errando, M Fagiolini, D Ferenc, E Fernandez, R Firpo, M V Fonseca, L Font, N Galante, R J Garcia Lopez, M Garczarczyk, M Gaug, F Goebel, D Hadasch, M Hayashida, A Herrero, D Höhne, J Hose, C C Hsu, S Huber, T Jogler, D Kranich, A La Barbera, A Laille, E Leonardo, E Lindfors, S Lombardi, F Longo, M Lopez, E Lorenz, P Majumdar, G Maneva, N Mankuzhiyil, K Mannheim, L Maraschi, M Mariotti, M Martinez, D Mazin, M Meucci, M Meyer, J M Miranda, R Mirzoyan, M Moles, A Moralejo, D Nieto, K Nilsson, J Ninkovic, N Otte, I Oya, R Paoletti, J M Paredes, M Pasanen, D Pascoli, F Pauss, R G Pegna, M A Perez-Torres, M Persic, L Peruzzo, A Piccioli, F Prada, E Prandini, N Puchades, A Raymers, W Rhode, M Ribó, J Rico, M Rissi, A Robert, S Rügamer, A Saggion, T Y Saito, M Salvati, M Sanchez-Conde, P Sartori, K Satalecka, V Scalzotto, V Scapin, T Schweizer, M Shayduk, K Shinozaki, S N Shore, N Sidro, A Sierpowska-Bartosik, A Sillanpää, D Sobczynska, F Spanier, A Stamerra, L S Stark, L Takalo, F Tavecchio, P Temnikov, D Tescaro, M Teshima, M Tluczykont, D F Torres, N Turini, H Vankov, A Venturini, V Vitale, R M Wagner, W Wittek, V Zabalza, F Zandanel, R Zanin, J Zapatero, O C de Jager, E de Ona Wilhelmi
One fundamental question about pulsars concerns the mechanism of their pulsed electromagnetic emission. Measuring the high-end region of a pulsar's spectrum would shed light on this question. By developing a new electronic trigger, we lowered the threshold of the MAGIC Cherenkov telescope to 25 GeV. In this configuration we detected pulsed gamma-rays from the Crab pulsar above 25 GeV, revealing a relatively high cut-off energy in the phase-averaged spectrum. This indicates that the emission occurs far out in the magnetosphere, hence excluding the polar cap scenario. The high cutoff also challenges the slot gap model.
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Functional Genomics Technology Team, Omics Science Center, RIKEN Yokohama Institute, Yokohama, Kanagawa, Japan.
BACKGROUND: The transcriptome of the cerebral cortex is remarkably homogeneous, with variations being stronger between individuals than between areas. It is thought that due to the presence of many distinct cell types, differences within one cell population will be averaged with the noise from others. Studies of sorted cells expressing the same transgene have shown that cell populations can be distinguished according to their transcriptional profile. METHODOLOGY: We have prepared a low-redundancy set of 16,209 full-length cDNA clones which represents the transcriptome of the mouse visual cortex in its coding and non-coding aspects. Using an independent tag-based approach, CAGE, we confirmed the cortical expression of 72% of the clones. Clones were amplified by PCR and spotted on glass slides, and we interrogated the microarrays with RNA from flow-sorted fluorescent cells from the cerebral cortex of parvalbumin-egfp transgenic mice. CONCLUSIONS: We provide an annotated cDNA clone collection which is particularly suitable for transcriptomic analysis in the mouse brain. Spotting it on microarrays, we compared the transcriptome of EGFP positive and negative cells in a parvalbumin-egfp transgenic background and showed that more than 30% of clones are differentially expressed. Our clone collection will be a useful resource for the study of the transcriptome of single cell types in the cerebral cortex.
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J Albert, E Aliu, H Anderhub, L A Antonelli, P Antoranz, M Backes, C Baixeras, J A Barrio, H Bartko, D Bastieri, J K Becker, W Bednarek, K Berger, E Bernardini, C Bigongiari, A Biland, R K Bock, G Bonnoli, P Bordas, V Bosch-Ramon, T Bretz, I Britvitch, M Camara, E Carmona, A Chilingarian, S Commichau, J L Contreras, J Cortina, M T Costado, S Covino, V Curtef, F Dazzi, A De Angelis, E De Cea Del Pozo, R de Los Reyes, B De Lotto, M De Maria, F De Sabata, C Delgado Mendez, A Dominguez, D Dorner, M Doro, M Errando, M Fagiolini, D Ferenc, E Fernández, R Firpo, M V Fonseca, L Font, N Galante, R J García López, M Garczarczyk, M Gaug, F Goebel, M Hayashida, A Herrero, D Höhne, J Hose, C C Hsu, S Huber, T Jogler, T M Kneiske, D Kranich, A La Barbera, A Laille, E Leonardo, E Lindfors, S Lombardi, F Longo, M López, E Lorenz, P Majumdar, G Maneva, N Mankuzhiyil, K Mannheim, L Maraschi, M Mariotti, M Martínez, D Mazin, M Meucci, M Meyer, J M Miranda, R Mirzoyan, S Mizobuchi, M Moles, A Moralejo, D Nieto, K Nilsson, J Ninkovic, N Otte, I Oya, M Panniello, R Paoletti, J M Paredes, M Pasanen, D Pascoli, F Pauss, R G Pegna, M A Perez-Torres, M Persic, L Peruzzo, A Piccioli, F Prada, E Prandini, N Puchades, A Raymers, W Rhode, M Ribó, J Rico, M Rissi, A Robert, S Rügamer, A Saggion, T Y Saito, M Salvati, M Sanchez-Conde, P Sartori, K Satalecka, V Scalzotto, V Scapin, R Schmitt, T Schweizer, M Shayduk, K Shinozaki, S N Shore, N Sidro, A Sierpowska-Bartosik, A Sillanpää, D Sobczynska, F Spanier, A Stamerra, L S Stark, L Takalo, F Tavecchio, P Temnikov, D Tescaro, M Teshima, M Tluczykont, D F Torres, N Turini, H Vankov, A Venturini, V Vitale, R M Wagner, W Wittek, V Zabalza, F Zandanel, R Zanin, J Zapatero
Universität Würzburg, D-97074 Würzburg, Germany.
The atmospheric Cherenkov gamma-ray telescope MAGIC, designed for a low-energy threshold, has detected very-high-energy gamma rays from a giant flare of the distant Quasi-Stellar Radio Source (in short: radio quasar) 3C 279, at a distance of more than 5 billion light-years (a redshift of 0.536). No quasar has been observed previously in very-high-energy gamma radiation, and this is also the most distant object detected emitting gamma rays above 50 gigaelectron volts. Because high-energy gamma rays may be stopped by interacting with the diffuse background light in the universe, the observations by MAGIC imply a low amount for such light, consistent with that known from galaxy counts.
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Laboratory for Neuronal Circuit Development, RIKEN Brain Science Institute, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan.
Local GABAergic circuits trigger visual cortical plasticity in early postnatal life. How these diverse connections contribute to critical period onset was investigated by nonstationary fluctuation analysis following laser photo-uncaging of GABA onto discrete sites upon individual pyramidal cells in slices of mouse visual cortex. The GABA(A) receptor number decreased on the soma-proximal dendrite (SPD), but not at the axon initial segment, with age and sensory deprivation. Benzodiazepine sensitivity was also higher on the immature SPD. Too many or too few SPD receptors in immature or dark-reared mice, respectively, were adjusted to critical period levels by benzodiazepine treatment in vivo, which engages ocular dominance plasticity in these animal models. Combining GAD65 deletion with dark rearing from birth confirmed that an intermediate number of SPD receptors enable plasticity. Site-specific optimization of perisomatic GABA response may thus trigger experience-dependent development in visual cortex.
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Department of Biology, Georgia State University, Atlanta, Georgia 30303, Department of Physiology, Emory University, Atlanta, Georgia 30322, Laboratory for Neuronal Circuit Development, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan, Department of Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15213, Center for Neural Science, New York University, New York, New York 10003, and Sucampo Pharmaceuticals, Bethesda, Maryland 20814.
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J Albert, E Aliu, H Anderhub, P Antoranz, A Armada, M Asensio, C Baixeras, J A Barrio, M Bartelt, H Bartko, D Bastieri, S R Bavikadi, W Bednarek, K Berger, C Bigongiari, A Biland, E Bisesi, R K Bock, P Bordas, V Bosch-Ramon, T Bretz, I Britvitch, M Camara, E Carmona, A Chilingarian, S Ciprini, J A Coarasa, S Commichau, J L Contreras, J Cortina, V Curtef, V Danielyan, F Dazzi, A De Angelis, R de Los Reyes, B De Lotto, E Domingo-Santamaría, D Dorner, M Doro, M Errando, M Fagiolini, D Ferenc, E Fernández, R Firpo, J Flix, M V Fonseca, L Font, M Fuchs, N Galante, M Garczarczyk, M Gaug, M Giller, F Goebel, D Hakobyan, M Hayashida, T Hengstebeck, D Höhne, J Hose, C C Hsu, P G Isar, P Jacon, O Kalekin, R Kosyra, D Kranich, M Laatiaoui, A Laille, T Lenisa, P Liebing, E Lindfors, S Lombardi, F Longo, J López, M López, E Lorenz, F Lucarelli, P Majumdar, G Maneva, K Mannheim, O Mansutti, M Mariotti, M Martínez, K Mase, D Mazin, C Merck, M Meucci, M Meyer, J M Miranda, R Mirzoyan, S Mizobuchi, A Moralejo, K Nilsson, E Oña-Wilhelmi, R Orduña, N Otte, I Oya, D Paneque, R Paoletti, J M Paredes, M Pasanen, D Pascoli, F Pauss, N Pavel, R Pegna, M Persic, L Peruzzo, A Piccioli, M Poller, G Pooley, E Prandini, A Raymers, W Rhode, M Ribó, J Rico, B Riegel, M Rissi, A Robert, G E Romero, S Rügamer, A Saggion, A Sánchez, P Sartori, V Scalzotto, V Scapin, R Schmitt, T Schweizer, M Shayduk, K Shinozaki, S N Shore, N Sidro, A Sillanpää, D Sobczynska, A Stamerra, L S Stark, L Takalo, P Temnikov, D Tescaro, M Teshima, N Tonello, A Torres, D F Torres, N Turini, H Vankov, V Vitale, R M Wagner, T Wibig, W Wittek, R Zanin, J Zapatero
Universität Würzburg, D-97074 Würzburg, Germany.
Microquasars are binary star systems with relativistic radio-emitting jets. They are potential sources of cosmic rays and laboratories for elucidating the physics of relativistic jets. Here we report the detection of variable gamma-ray emission above 100 gigaelectron volts from the microquasar LS I +61 303. Six orbital cycles were recorded. Several detections occur at a similar orbital phase, suggesting the emission is periodic. The strongest gamma-ray emission is not observed when the two stars are closest to one another, implying a strong orbital modulation of the emission or the absorption processes.
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P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells, R Kodzius, K Shimokawa, V B Bajic, S E Brenner, S Batalov, A R R Forrest, M Zavolan, M J Davis, L G Wilming, V Aidinis, J E Allen, A Ambesi-Impiombato, R Apweiler, R N Aturaliya, T L Bailey, M Bansal, L Baxter, K W Beisel, T Bersano, H Bono, A M Chalk, K P Chiu, V Choudhary, A Christoffels, D R Clutterbuck, M L Crowe, E Dalla, B P Dalrymple, B de Bono, G Della Gatta, D di Bernardo, T Down, P Engstrom, M Fagiolini, G Faulkner, C F Fletcher, T Fukushima, M Furuno, S Futaki, M Gariboldi, P Georgii-Hemming, T R Gingeras, T Gojobori, R E Green, S Gustincich, M Harbers, Y Hayashi, T K Hensch, N Hirokawa, D Hill, L Huminiecki, M Iacono, K Ikeo, A Iwama, T Ishikawa, M Jakt, A Kanapin, M Katoh, Y Kawasawa, J Kelso, H Kitamura, H Kitano, G Kollias, S P T Krishnan, A Kruger, S K Kummerfeld, I V Kurochkin, L F Lareau, D Lazarevic, L Lipovich, J Liu, S Liuni, S McWilliam, M Madan Babu, M Madera, L Marchionni, H Matsuda, S Matsuzawa, H Miki, F Mignone, S Miyake, K Morris, S Mottagui-Tabar, N Mulder, N Nakano, H Nakauchi, P Ng, R Nilsson, S Nishiguchi, S Nishikawa, F Nori, O Ohara, Y Okazaki, V Orlando, K C Pang, W J Pavan, G Pavesi, G Pesole, N Petrovsky, S Piazza, J Reed, J F Reid, B Z Ring, M Ringwald, B Rost, Y Ruan, S L Salzberg, A Sandelin, C Schneider, C Schönbach, K Sekiguchi, C A M Semple, S Seno, L Sessa, Y Sheng, Y Shibata, H Shimada, K Shimada, D Silva, B Sinclair, S Sperling, E Stupka, K Sugiura, R Sultana, Y Takenaka, K Taki, K Tammoja, S L Tan, S Tang, M S Taylor, J Tegner, S A Teichmann, H R Ueda, E van Nimwegen, R Verardo, C L Wei, K Yagi, H Yamanishi, E Zabarovsky, S Zhu, A Zimmer, W Hide, C Bult, S M Grimmond, R D Teasdale, E T Liu, V Brusic, J Quackenbush, C Wahlestedt, J S Mattick, D A Hume, C Kai, D Sasaki, Y Tomaru, S Fukuda, M Kanamori-Katayama, M Suzuki, J Aoki, T Arakawa, J Iida, K Imamura, M Itoh, T Kato, H Kawaji, N Kawagashira, T Kawashima, M Kojima, S Kondo, H Konno, K Nakano, N Ninomiya, T Nishio, M Okada, C Plessy, K Shibata, T Shiraki, S Suzuki, M Tagami, K Waki, A Watahiki, Y Okamura-Oho, H Suzuki, J Kawai, Y Hayashizaki
This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs derived from the mouse genome. We identify the 5' and 3' boundaries of 181,047 transcripts with extensive variation in transcripts arising from alternative promoter usage, splicing, and polyadenylation. There are 16,247 new mouse protein-coding transcripts, including 5154 encoding previously unidentified proteins. Genomic mapping of the transcriptome reveals transcriptional forests, with overlapping transcription on both strands, separated by deserts in which few transcripts are observed. The data provide a comprehensive platform for the comparative analysis of mammalian transcriptional regulation in differentiation and development.
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Laboratory for Neuronal Circuit Development, Critical Period Mechanisms Research Group, RIKEN Brain Science Institute, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan. hensch@riken.jp
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Laboratory for Neuronal Circuit Development, RIKEN Brain Science Institute, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198 Japan.
Weak inhibition within visual cortex early in life prevents experience-dependent plasticity. Loss of responsiveness to an eye deprived of vision can be initiated prematurely by enhancing gamma-aminobutyric acid (GABA)-mediated transmission with benzodiazepines. Here, we use a mouse "knockin" mutation to alpha subunits that renders individual GABA type A (GABA(A)) receptors insensitive to diazepam to show that a particular inhibitory network controls expression of the critical period. Only alpha1-containing circuits were found to drive cortical plasticity, whereas alpha2-enriched connections separately regulated neuronal firing. This dissociation carries implications for models of brain development and the safe design of benzodiazepines for use in infants.
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