BioInfoBank Library


 
author name recommending commenting favorite    papers recom. cited
0 0 0 63 0 3438 [Update]
0 0 0 8 0 16 [Update]
0 0 0 57 0 713 [Update]
0 0 0 2 0 0 [Update]
0 0 0 2 0 8 [Update]
0 0 0 1 0 6 [Update]
0 0 0 3 0 6 [Update]
0 0 0 1 0 0 [Update]
0 0 0 9 0 332 [Update]
0 0 0 1 0 7 [Update]
0 0 0 39 0 300 [Update]
0 0 0 1 0 7 [Update]
0 0 0 2 0 20 [Update]
0 0 0 6 0 57 [Update]
0 0 0 3 0 21 [Update]
0 0 0 3 0 17 [Update]
0 0 0 4 0 7 [Update]
0 0 0 1 0 0 [Update]
0 0 0 1 0 0 [Update]
0 0 0 4 0 19 [Update]
0 0 0 2 0 10 [Update]

Latest Paper:

go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Department of Internal Medicine, Seonam University College of Medicine, Seonam University Namkwang Hospital, Gwangju, Korea.
Humans can be incidentally parasitized by third-stage larvae of Anisakis species following the ingestion of raw or undercooked seafood. Acute gastric anisakiasis is one of the most frequently encountered complaints in Korea. However, duodenal anisakiasis with duodenal ulcer had not been reported in Korea, despite the habit of eating raw fish. In this case, a 47-year-old man was hospitalized because of sharp epigastric pain and repeated vomiting after eating raw fish 3 days previously. On admission, esophagogastroduodenoscopic examination revealed an active duodenal bulb ulcer. At 5 mm away from the ulcer margin, a whitish linear worm was found with half of its body penetrating the duodenal mucosa. Herein, we report this case of duodenal anisakiasis accompanied by duodenal ulcer.
go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Pohang University of Science and Technology, Korea, Republic of;
mTOR complex 1 (mTORC1) is a multi-protein complex that integrates diverse signals including growth factors, nutrients, and stress to control cell growth. Raptor is an essential component of mTORC1 that functions to recruit specific substrates. Recently, Raptor was suggested to be a key target of regulation of mTORC1. Here, we show that Raptor is phosphorylated by JNK upon osmotic stress. We identified that osmotic stress induces the phosphorylation of Raptor at S696, T706, and S863 using liquid chromatography-tandem mass spectrometry. We found that JNK is responsible for the phosphorylation. The inhibition of JNK abolishes the phosphorylation of Raptor induced by osmotic stress in cells. Furthermore, JNK physically associates with Raptor and phosphorylates Raptor in vitro, implying that JNK is responsible for the phosphorylation of Raptor. Finally, we found that osmotic stress activates mTORC1 kinase activity in JNK-dependent manner. Our findings suggest that the molecular link between JNK and Raptor is a potential mechanism by which stress regulates mTORC1 signaling pathway.
go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Dept of Radiation Oncology, Princess Margaret Hospital, 620 University Avenue, Toronto, ON, M5G 2M9, Canada. E-mail: zishan.allibhai@gmail.com.
go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Research Institute of Immunobiology, Catholic Research Institute of Medical Science and 2 Department of Internal Medicine, Catholic University of Korea, Seoul 137-701, South Korea.
An accumulation of misfolded proteins can trigger a cellular survival response in the endoplasmic reticulum (ER). In this study, we found that ER stress-associated gene signatures were highly expressed in rheumatoid arthritis (RA) synoviums and synovial cells. Proinflammatory cytokines, such as TNF and IL-1β, increased the expression of GRP78/BiP, a representative ER chaperone, in RA synoviocytes. RA synoviocytes expressed higher levels of GRP78 than osteoarthritis (OA) synoviocytes when stimulated by thapsigargin or proinflammatory cytokines. Down-regulation of Grp78 transcripts increased the apoptosis of RA synoviocytes while abolishing TNF- or TGF-β-induced synoviocyte proliferation and cyclin D1 up-regulation. Conversely, overexpression of the Grp78 gene prevented synoviocyte apoptosis. Moreover, Grp78 small interfering RNA inhibited VEGF(165)-induced angiogenesis in vitro and also significantly impeded synoviocyte proliferation and angiogenesis in Matrigel implants engrafted into immunodeficient mice. Additionally, repeated intraarticular injections of BiP-inducible factor X, a selective GRP78 inducer, increased synoviocyte proliferation and angiogenesis in the joints of mice with experimental OA. In contrast, mice with Grp78 haploinsufficiency exhibited the suppression of experimentally induced arthritis and developed a limited degree of synovial proliferation and angiogenesis. In summary, this study shows that the ER chaperone GRP78 is crucial for synoviocyte proliferation and angiogenesis, the pathological hallmark of RA.
go to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Cell Differentiation and Toxicity Group, Institut Pasteur Korea, Sampyeong-dong 696, Bundang-gu, Seongnam-si, Gyeonggi-do, South Korea. dorvalt@ip-korea.org.
Embryonic stem cells due to their self-renewal and pluripotency properties can be used to repair damaged tissues,and as an unlimited source of differentiated cells. Although stem cells represent an important opportunity for cell based therapy, and small molecules screening in the context of drug or target discovery, many drawbacks are still preventing their widespread uses. One of the most significant limitations is related to the complexity, as well as the reliability, of current protocols driving stem cells into any homogeneously differentiated cellular population. In this respect there is a strong demand for molecular agents promoting differentiation and thereby enabling robust, efficient and safe production of differentiated cells. In order to identify novel molecules that enhance early stages of differentiation, we developed an image based high content screening (HCS) approach using human embryonic stem cells (hESC). In our approach, we took advantage of custom image mining software specifically adapted for the selection of stem cell differentiation agents and the rejection of false positive hits. As a prove of concept we screened ~3500 small molecules originating from commercial libraries and were able to identify molecules of interests that show stem cell differentiation properties comparable to the phenotypic signature obtained with retinoic acid.
Sci Rep. 2011 ;1 :122  22355639 
go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Disrupted cortical cytoarchitecture in cerebellum is a typical pathology in reeler. Particularly interesting are structural problems at the cellular level: dendritic morphology has important functional implication in signal processing. Here we describe a combinatorial imaging method of synchrotron X-ray microtomography with Golgi staining, which can deliver 3-dimensional(3-D) micro-architectures of Purkinje cell(PC) dendrites, and give access to quantitative information in 3-D geometry. In reeler, we visualized in 3-D geometry the shape alterations of planar PC dendrites (i.e., abnormal 3-D arborization). Despite these alterations, the 3-D quantitative analysis of the branching patterns showed no significant changes of the 77 ± 8° branch angle, whereas the branch segment length strongly increased with large fluctuations, comparing to control. The 3-D fractal dimension of the PCs decreased from 1.723 to 1.254, indicating a significant reduction of dendritic complexity. This study provides insights into etiologies and further potential treatment options for lissencephaly and various neurodevelopmental disorders.
go to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Department of Medicine, University of Western Ontario, London, Ontario. faranak.esmaeilbeigi@mail.utoronto.ca
Desquamative interstitial pneumonia (DIP) is a rare form of interstitial lung disease (ILD) commonly found among healthy smokers. ILD is a rare manifestation of systemic lupus erythematosus (SLE), and typically associated with a histopathological pattern of nonspecific interstitial pneumonia (NSIP). The present article describes an unusual case of DIP in a nonsmoking patient with SLE presenting as NSIP. DIP can occur in the context of SLE in patients with a negative smoking history, and clinicians should consider lung biopsy to correctly classify ILD with unusual presentation on computed tomography scan.
go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
Division of Molecular and Life Sciences, POSTECH, Hyojadong, Pohang, Kyungbuk, 790-784, Republic of Korea.
The endogenous circadian clock regulates many physiological processes related to plant survival and adaptability. GIGANTEA (GI), a clock-associated protein, contributes to the maintenance of circadian period length and amplitude, and also regulates flowering time and hypocotyl growth in response to day length. Similarly, EARLY FLOWERING 4 (ELF4), another clock regulator, also contributes to these processes. However, little is known about either the genetic or molecular interactions between GI and ELF4 in Arabidopsis. In this study, we investigated the genetic interactions between GI and ELF4 in the regulation of circadian clock-controlled outputs. Our mutant analysis shows that GI is epistatic to ELF4 in flowering time determination, while ELF4 is epistatic to GI in hypocotyl growth regulation. Moreover, GI and ELF4 have a synergistic or additive effect on endogenous clock regulation. Gene expression profiling of gi, elf4, and gi elf4 mutants further established that GI and ELF4 have differentially dominant influences on circadian physiological outputs at dusk and dawn, respectively. This phasing of GI and ELF4 influences provides a potential means to achieve diversity in the regulation of circadian physiological outputs, including flowering time and hypocotyl growth.
go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
POSTECH, Department of Life Sciences, Pohang, Korea, Republic of; activase@postech.ac.kr.
Rice stripe virus (RSV) causes disease that can severely affect the productivity of rice (Oryza sativa). Several RSV resistant cultivars have been developed. However, host factors conferring RSV resistance in these cultivars are still elusive. Here, we present a systems approach for identifying potential rice resistance factors. We developed two near isogenic RSV resistant (NIL22) and susceptible (NIL37) lines and performed gene expression profiling of the two lines in RSV infected and uninfected conditions. We identified 237 differentially expressed genes (DEGs) between NIL22 and NIL37. By integrating with known quantitative trait loci (QTLs), we selected 11 DEGs located within the RSV resistance QTLs as RSV resistance factor candidates. Furthermore, we identified 417 DEGs between RSV infected and uninfected conditions. Using an interaction network-based method, we selected 20 DEGs highly interacting with the two sets of DEGs as RSV resistance factor candidates. Among the 31 candidates, we selected the final set of 21 potential RSV resistance factors whose differential expression was confirmed in the independent samples using real-time RT-PCR. Finally, we reconstructed a network model delineating potential association of the 21 selected factors with resistance-related processes. In summary, our approach based on gene expression profiling revealed potential host resistance factors and a network model describing their relationships with resistance-related processes, which can be further validated in detailed experiments.
go to Publishergo to Pubmedgo to Scholargo to Googleshow EndNote Citationshow BibTex Citation
School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, Pohang, Kyungbook 790-784, South Korea.
Phospholipase D (PLD) is a phosphatidyl choline (PC)-hydrolyzing enzyme that generates phosphatidic acid (PA), a lipid second messenger that modulates diverse intracellular signaling. Through interactions with signaling molecules, both PLD and PA can mediate a variety of cellular functions, such as, growth/proliferation, vesicle trafficking, cytoskeleton modulation, development, and morphogenesis. Therefore, systemic approaches for investigating PLD networks including interrelationship between PLD and PA and theirs binding partners, such as proteins and lipids, can enhance fundamental knowledge of roles of PLD and PA in diverse biological processes. In this review, we summarize previously reported protein-protein and protein-lipid interactions of PLD and PA and their binding partners. In addition, we describe the functional roles played by PLD and PA in these interactions, and provide PLD network that summarizes these interactions. The PLD network suggests that PLD and PA could act as a decision maker and/or as a coordinator of signal dynamics. This viewpoint provides a turning point for understanding the roles of PLD-PA as a dynamic signaling hub.
Polish News
2012-05-17 17:56:44 © BioInfoBank Institute