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Latest Paper:
Marie-Louise Ricketts,
Mark V Boekschoten,
Arja J Kreeft,
Guido J E J Hooiveld,
Corina J A Moen,
Michael Müller,
Rune R Frants,
Soemini Kasanmoentalib,
Sabine M Post,
Hans Mg Princen,
J Gordon Porter,
Martijn B Katan,
Marten H Hofker,
David D Moore
Baylor College of Medicine, Houston, TX, USA (M.L.R., D.D.M.), Wageningen University, Division of Human Nutrition, The Netherlands (M.V.B., G.J.E.J.H., M.M.), Wageningen Centre for Food Sciences, The Netherlands (M.V.B.), Center for Human and Clinical Genetics, LUMC, Leiden, The Netherlands (A.J.K., C.J.A.M., R.R.F.), Dept. of Medical Statistics, LUMC, Leiden, The Netherlands (S.K.), TNO Pharma, Leiden, The Netherlands (S.M.P., H.M.G.P.), Incyte Corp. Palo Alto CA,(Present address: CV Therapeutics, Palo Alto, CA)(J.G.P.), Vriye Univeriteit Amsterdam, Institute for Health Sciences, The Netherlands (M.B.K.); Department of Pathology and Laboratory Medicine, University Medical Center, Groningen, The Netherlands (M.H.H.).
Cafestol, a diterpene present in unfiltered coffee brews such as Scandinavian boiled, Turkish and Cafetière coffee, is the most potent cholesterol-elevating compound known in the human diet. Several genes involved in cholesterol homeostasis have previously been shown to be targets of cafestol, including CYP7A1, the rate-limiting enzyme in bile acid biosynthesis. We have examined the mechanism by which cafestol elevates serum lipid levels. Changes in several lipid parameters were observed in cafestol-treated APOE3Leiden mice, including a significant increase in serum triglyceride levels. Microarray analysis of these mice identified alterations in hepatic expression of genes involved in lipid metabolism and detoxification, many of which are regulated by the nuclear hormone receptors FXR and PXR. Further studies demonstrate that cafestol is an agonist ligand for FXR and PXR, and that cafestol down-regulates expression of the bile acid homeostatic genes CYP7A1, CYP8B1 and NTCP in the liver of wild type but not FXR null mice. Cafestol did not affect genes known to be up-regulated by FXR in the liver of wild type mice, but did increase expression of the positive FXR-target genes IBABP and FGF15 in the intestine. Since FGF15 has recently been shown to function in an enterohepatic regulatory pathway to repress liver expression of bile acid homeostatic genes, its direct induction in the gut may account for indirect effects of cafestol on liver gene expression. PXR-dependent gene regulation of CYP3A11, and other targets by cafestol was also only seen in the intestine. Using a double FXR/PXR knockout mouse model, we found that both receptors contribute to the cafestol-dependent induction of intestinal FGF15 gene expression. In conclusion, cafestol acts as an agonist ligand for both FXR and PXR and this may contribute to its impact on cholesterol homeostasis.
Arja J Kreeft,
Corina J A Moen,
Gordon Porter,
Soemini Kasanmoentalib,
Ronit Sverdlov,
Patrick J van Gorp,
Louis M Havekes,
Rune R Frants,
Marten H Hofker
Department of Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
The mechanisms of diet induced hyperlipidemia and atherosclerosis have been widely studied by delineating the role of candidate genes in transgenic and gene targeted mouse models. However, diet induced hyperlipidemia represents a complex process determined by many lipid genes that is only partly understood. This study is aimed at delineating the events induced by dietary intervention in different mouse models at the level of gene expression using microarray analysis. The focus is on the liver as the organ primarily responding to diet, and crucial in determining plasma lipid levels. Firstly, the effect of the genotype was studied. Expression profiles of liver genes were compared between APOE3Leiden (E3L), APOE knockout (E-/-) and C57BL/6JIco (B6) mice using the Incyte GEM 2.03 array carrying 9552 genes. Several hundred differentially expressed genes were identified indicating that the genotype alone effects gene expression. Secondly, the response of E3L mice to high-fat feeding was investigated using a mild and severe high-fat diet (diet W and N, respectively). Diet W caused differential regulation of 200 genes, while diet N affected the expression of 788 genes in B6 and 1010 genes in E3L mice. Annotation of these genes using the Gene Ontology (GO) database showed that two major processes were strongly affected by genotype and diet, namely lipid metabolism and inflammation, the latter as determined by "immune/defense response and detoxification" processes. Many nuclear receptor target genes were differentially regulated, with the largest effects modulated by the severe high-fat diet N, leading to the suppression of genes involved in bile acid, sterol, steroid, fatty acid, and detoxification metabolism. Strikingly, a substantial part of these nuclear receptor target genes were commonly regulated during the different experimental conditions. The common regulation of many nuclear receptor target genes underlying lipid and detoxification processes as found in this study, suggest a defense mechanism involving many nuclear receptors to protect against the accumulation of toxic endogenous lipids and bile acids. These results further strengthen the close link between hyperlipidemia and inflammatory processes.
Mesh-terms: Animals; Apolipoproteins E :: genetics; Atherosclerosis :: genetics; Atherosclerosis :: immunology; Atherosclerosis :: metabolism; Dietary Fats :: pharmacology; Disease Models, Animal; Gene Expression Profiling; Gene Expression Regulation :: immunology; Humans; Hyperlipidemia :: genetics; Hyperlipidemia :: immunology; Hyperlipidemia :: metabolism; Liver :: physiology; Mice; Mice, Inbred C57BL; Mice, Transgenic; Oligonucleotide Array Sequence Analysis; Receptors, Cytoplasmic and Nuclear :: genetics; Receptors, Cytoplasmic and Nuclear :: immunology; Receptors, Cytoplasmic and Nuclear :: metabolism; Research Support, Non-U.S. Gov't; Reverse Transcriptase Polymerase Chain Reaction; Vasculitis :: genetics; Vasculitis :: immunology; Vasculitis :: metabolism;
Henk P J Buermans,
Everaldo M Redout,
Anja E Schiel,
René J P Musters,
Marian Zuidwijk,
Paul P Eijk,
Cornelis van Hardeveld,
Soemini Kasanmoentalib,
Frans C Visser,
Bauke Ylstra,
Warner S Simonides
Laboratory for Physiology, VU University Medical Center, Amsterdam, The Netherlands.
Myocardial right ventricular (RV) hypertrophy due to pulmonary hypertension is aimed at normalizing ventricular wall stress. Depending on the degree of pressure overload, RV hypertrophy may progress to a state of impaired contractile function and heart failure, but this cannot be discerned during the early stages of ventricular remodeling. We tested whether critical differences in gene expression profiles exist between ventricles before the ultimate development of either a compensated or decompensated hypertrophic phenotype. Both phenotypes were selectively induced in Wistar rats by a single subcutaneous injection of either a low or a high dose of the pyrrolizidine alkaloid monocrotaline (MCT). Spotted oligonucleotide microarrays were used to investigate pressure-dependent cardiac gene expression profiles at 2 wk after the MCT injections, between control rats and rats that would ultimately develop either compensated or decompensated hypertrophy. Clustering of significantly regulated genes revealed specific expression profiles for each group, although the degree of hypertrophy was still similar in both. The ventricles destined to progress to failure showed activation of pro-apoptotic pathways, particularly related to mitochondria, whereas the group developing compensated hypertrophy showed blocked pro-death effector signaling via p38-MAPK, through upregulation of MAPK phosphatase-1. In summary, we show that, already at an early time point, pivotal differences in gene expression exist between ventricles that will ultimately develop either a compensated or a decompensated phenotype, depending on the degree of pressure overload. These data reveal genes that may provide markers for the early prediction of clinical outcome as well as potential targets for early intervention.
Leiden University Medical Center, Leiden, The Netherlands.
Recently, fluorescent, monofunctional cis-platin derivatives have been developed to chemically label nucleic acids for use in fluorescent hybridization assays. Here we show by hybridizations to microarrays containing oligonucleotide probes for the 3' ends, middle parts, and 5' ends of mRNAs, that this labeling methodology bypasses the problem of the 3' end bias that is characteristic of the conventional enzymatic oligo(dT)-primed, reverse transcription labeling of mRNAs.
Mesh-terms: DNA :: chemistry; DNA :: genetics; Fluorescent Dyes; Gene Expression Profiling :: methods; Humans; Jurkat Cells; Oligonucleotide Array Sequence Analysis :: methods; RNA :: chemistry; Reproducibility of Results; Research Support, Non-U.S. Gov't; Sensitivity and Specificity; Staining and Labeling :: methods;
Department of Medical Chemistry, Faculty of Medicine, Vrije Universiteit, Amsterdam, The Netherlands.
Human salivary chitinase could play a role in the defence against chitin-containing oral pathogens. The activity levels of chitinase in the whole saliva of periodontitis patients were significantly higher than those in saliva from controls. Periodontal treatment for a period of 5-6 months resulted in a three- to fourfold decrease in this enzyme activity. The activity of beta-N-acetylhexosaminidase, which is another enzyme that hydrolyses glycosidic linkages, also decreased as a result of treatment, although to a lesser extent. The decrease in chitinase activity upon treatment of the disease did not correlate with the decrease that was seen in clinical attachment loss and bleeding on probing, and only a weak correlation was observed with the changes in probing pocket depth and plaque index. No correlations were found between the above clinical parameters and the decrease in beta-N-acetylhexosaminidase activity.
Mesh-terms: Adult; Aged; Analysis of Variance; Chitinase :: analysis; Dental Plaque Index; Dental Scaling; Female; Follow-Up Studies; Gingival Hemorrhage :: enzymology; Gingival Hemorrhage :: therapy; Human; Male; Middle Aged; Oral Hygiene; Periodontal Attachment Loss :: enzymology; Periodontal Attachment Loss :: therapy; Periodontal Index; Periodontal Pocket :: enzymology; Periodontal Pocket :: therapy; Periodontitis :: enzymology; Periodontitis :: therapy; Regression Analysis; Root Planing; Saliva :: enzymology; Salivary Proteins :: analysis; Statistics; Subgingival Curettage; beta-N-Acetylhexosaminidase :: analysis;
Department of Medical Chemistry, Faculty of Medicine, Vrije Universiteit, Amsterdam, The Netherlands.
In recent studies the existence of a chitinase in various mammals, like man, was described. The aim of the present study was to find out whether salivas of periodontally healthy and inflamed humans also contain chitinase activity. Chitinase activity, assayed with the substrate 4-methylumbelliferyl-beta-D-N,N',N"-triacetylchitotrioside, was shown to be present in human whole saliva, with an activity level and apparent molecular mass (35 kDa) that were comparable with those of the human serum enzyme. Both lysozyme and beta-N-acetylhexosaminidase could be separated from chitinase by means of Bio-Gel P-100 gel filtration chromatography. The enzyme was also present in glandular saliva of parotid, palatine, submandibular and sublingual glands. The chitinase activity was not of oral epithelial, bacterial or plaque bacterial origin and was not correlated with the activity of salivary amylase. A comparative study of whole salivas of periodontally healthy controls and gingivitis and periodontitis subjects showed that only in the case of periodontitis there was a significant increase of the specific chitinase activity. The latter enzyme showed a gel filtration pattern that was comparable with that of the enzyme from controls. The measured albumin levels in saliva and the absence of correlation between the chitinase activity levels in plasma and saliva from periodontitis patients indicated that the (increased) chitinase activities did not originate from blood leakage to the oral cavity.
Mesh-terms: Adolescent; Adult; Amylases :: analysis; Chitinase :: analysis; Chitinase :: blood; Chromatography, Gel; Comparative Study; Female; Gels; Gingivitis :: enzymology; Human; Male; Middle Aged; Muramidase :: analysis; Parotid Gland :: enzymology; Periodontitis :: enzymology; Saliva :: enzymology; Salivary Glands, Minor :: enzymology; Salivary Proteins :: analysis; Sublingual Gland :: enzymology; Submandibular Gland :: enzymology; beta-N-Acetylhexosaminidase :: analysis;
