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Latest Paper:
ChemSusChem. 2012 May 8;:
22570262
School of Environmental Science and Engineering, Gwangju Institute of Science and Technology (GIST), 261 Cheomdan-gwagiro (Oryong-dong), Buk-gu, Gwangju 500-712 (Republic of Korea), Fax:(+82) 62-715-2434.
To scale-up microbial fuel cells (MFCs), installing multiple unit cells in a common reactor has been proposed; however, there has been a serious potential drop when connecting unit cells in series. To determine the source of the loss, a basic stack-MFC (BS-MFC) has been devised, and the results show that the phenomenon is due to ions on the anode electrode traveling through the electrolyte to be reduced at the cathode connected in series. As calculated by means of the percentage potential drop, the degree of potential drop decreased with an increase in the unit-cell distance. When the distance was increased from 1 to 8 cm, the percentage potential drop in BS-MFC1 decreased from 46.76±0.90 to 45.08±0.70 % and in BS-MFC2 from 46.41±0.95 to 43.82±2.23 %. As the p-value of the t-test was lower than 0.05, the difference was considered significant; however, if the unit cells are installed far enough from each other to avoid the potential drop phenomenon, the system will be less dense, consequently reducing the ratio of electrode area per volume of anode compartment and decreasing the power density of the system. Finally, this study suggests design criteria for scaling-up MFC systems: Multiple-electrode-installed MFCs are modularized, and the unit cells are connected in series across the module (connecting each unit cell does not share the anolyte).
Opt Lett. 2012 May 1;37 (9):1457-9
22555703
We report an axial-asymmetric high-Q Fabry-Perot cavity supporting nondegenerate Hermite-Gaussian modes of the same mode order. Axial asymmetry of mirror surface was introduced by mechanically grinding off one side of a cylindrical mirror substrate without degrading the original mirror quality. The bases of the resulting Hermite-Gaussian modes were aligned with respect to the direction of grinding, making it possible to prescribe the mirror principal axes.
Int J Tuberc Lung Dis. 2012 Apr 9;:
22508109
B D Ye,
S-K Yang,
D Kim,
T S Shim,
S-H Kim,
M-N Kim,
Y J Lee,
H K Na,
S H Park,
D-H Yang,
K J Kim,
J-S Byeon,
S-J Myung,
J-H Kim
SETTING: It is challenging to differentiate between intestinal tuberculosis (ITB) and Crohn's disease in areas where TB is still prevalent. The use of diagnostic tools and verifying the drug resistance patterns of ITB can be helpful for its correct diagnosis.OBJECTIVE: To determine the diagnostic sensitivity of a culture assay using colonoscopic biopsy specimens and the drug resistance patterns of Mycobacterium tuberculosis isolated from ITB.DESIGN: Data from 400 patients diagnosed with ITB were retrospectively analysed.RESULTS: Of the 400 patients, 170 (42.5%) were males; the median age at diagnosis was 40 years. The sensitivity of culture was 44.1%(145/329). Resistance to at least one anti-tuberculosis drug was identified in 13 (17.6%) and multidrug-resistant TB (MDR-TB) was d iagnosed in two (2.7%) of the 74 patients for whom drug susceptibility testing was performed. Including M. tuberculosis isolated from respiratory specimens, the proportion of MDR-TB was 4.4%(5/113); previous anti-tuberculosis treatment was an independent risk factor for MDR-TB (26.7% vs. 1.0%, P < 0.01).CONCLUSION: Culture of colonoscopic biopsy specimens shows substantial diagnostic sensitivity; the frequency of MDR-TB is higher in previously treated cases than in new cases.
Small. 2012 Mar 30;:
22467223
Tae-Il Kim,
Yei Hwan Jung,
Jizhou Song,
Daegon Kim,
Yuhang Li,
Hoon-Sik Kim,
Il-Sun Song,
Jonathan J Wierer,
Hsuan An Pao,
Yonggang Huang,
John A Rogers
Department of Materials Science and Engineering, Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
A method for forming efficient, ultrathin GaN light-emitting diodes (LEDs) and for their assembly onto foreign substances is reported. The LEDs have lateral dimensions ranging from ∼1 mm × 1 mm to ∼25 μm × 25 μm. Quantitative experimental and theoretical studies show the benefits of small device geometry on thermal management, for both continuous and pulsed-mode operation, the latter of which suggests the potential use of these technologies in bio-integrated contexts.
Br J Cancer. 2012 Mar 22;:
22441644
S Bracarda,
T E Hutson,
C Porta,
R A Figlin,
E Calvo,
V Grünwald,
A Ravaud,
R Motzer,
D Kim,
O Anak,
A Panneerselvam,
B Escudier
Ospedale San Donato USL8, Istituto Toscano Tumori (ITT), Via Pietro Nenni, 20 52100 Arezzo, Italy.
Background:A relevant percentage of patients with metastatic renal cell carcinoma develop intolerance to vascular endothelial growth factor receptor-tyrosine kinase inhibitors (VEGFr-TKIs) and require careful selection of subsequent treatment. This retrospective analysis evaluated the safety and efficacy of everolimus in patients enrolled in the phase-III RECORD-1 trial who discontinued previous VEGFr-TKI therapy because of toxicity.Methods:Patients with an adverse event (AE) as their primary reason for discontinuation of previous VEGFr-TKI therapy were included. Median progression-free survival (PFS) for VEGFr-TKI-intolerant patients in each arm was estimated using the Kaplan-Meier method, and effect on PFS (hazard ratio (HR)) was calculated using the Cox proportional hazard model.Results:In VEGFr-TKI-intolerant patients (n=58, 14%), median PFS was 5.4 months with everolimus and 1.9 months with placebo (HR: 0.32; P=0.004). In sunitinib-intolerant patients (n=26), median PFS was 5.1 months with everolimus and 2.8 months with placebo (HR: 0.28; P=0.033). Grade 3/4 AEs reported with everolimus in VEGFr-TKI-intolerant patients included infections (16%), fatigue (7%) and stomatitis (4%). The toxicity profile of everolimus was similar in the VEGFr-TKI-intolerant and overall study populations.Conclusion:Everolimus is well tolerated and efficacious with no increased toxicity in patients intolerant to VEGFr-TKI therapy.British Journal of Cancer advance online publication, 22 March 2012; doi:10.1038/bjc.2012.89 www.bjcancer.com.
Eur Radiol. 2012 Mar 17;:
22427184
Joon Seok Lim,
Daehong Kim,
Song-Ee Baek,
Sungmin Myoung,
Junjeong Choi,
Sang Joon Shin,
Myeong-Jin Kim,
Nam Kyu Kim,
Jinsuk Suh,
Ki Whang Kim,
Ki Chang Keum
Department of Radiology, Research Institute of Radiological Science, Yonsei University Health System, Seoul, Republic of Korea.
OBJECTIVES: To evaluate the utility of perfusion MRI as a potential biomarker for predicting response to chemoradiotherapy (CRT) in locally advanced rectal cancer. METHODS: Thirty-nine patients with primary rectal carcinoma who were scheduled for preoperative CRT were prospectively recruited. Perfusion MRI was performed with a 3.0-T MRI system in all patients before therapy, at the end of the 2nd week of therapy, and before surgery. The K (trans)(volume transfer constant) and V (e)(extracellular extravascular space fraction) were calculated. RESULTS: Before CRT, the mean tumour K (trans) in the downstaged group was significantly higher than that in the non-downstaged group (P = 0.0178), but there was no significant difference between tumour regression grade (TRG) responders and TRG non-responders (P = 0.1392). Repeated-measures analysis of variance (ANOVA) showed significant differences for evolution of K (trans) values both between downstaged and non-downstaged groups (P = 0.0215) and between TRG responders and TRG non-responders (P = 0.0001). Regarding V (e), no significant differences were observed both between downstaged and non-downstaged groups (P = 0.689) or between TRG responders and TRG non-responders (P = 0.887). CONCLUSION: Perfusion MRI of rectal cancer can be useful for assessing tumoural K (trans) changes by CRT. Tumours with high pre-CRT K (trans) values tended to respond favourably to CRT, particularly in terms of downstaging criteria. KEY POINTS: • Perfusion MRI can now assess therapeutic response of tumours to therapy. • Tumours with high initial K ( trans ) values responded favourably to chemoradiotherapy. • Perfusion MRI of rectal cancer may help with decisions about management.
Neuroscience. 2012 Feb 24;:
22390943
Department of Psychiatry, University of Ulsan College of Medicine, Asan Medical Center, Seoul.
Early intervention and maintenance treatment for schizophrenia patients may prolong the duration of exposure to antipsychotic agents; however, there have been few studies on the neurotoxicity of these agents. Here, we investigated the effects of antipsychotics on cell viability and autophagy in rat primary neurons. Cultured cortical neurons obtained from rat embryos were treated with various concentrations of haloperidol and clozapine, and the neuronal toxicity was assessed by measuring lactate dehydrogenase (LDH) activity and 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium (MTS) assay. Autophagosomes were quantitated by measuring the level of microtubule-associated protein 1A/1B-light chain 3 (LC3-II) by Western blot and immunofluorescence staining. Autophagic flux was assayed using bafilomycin A1 and GFP-mCherry-LC3 transfection. Haloperidol and clozapine decreased the viability of neurons in vitro in a concentration- and time-dependent manner. We also observed increased accumulation of autophagosomes after antipsychotic treatment. Using bafilomycin A1 and GFP-mCherry-LC3 transfection, we discovered that haloperidol and clozapine inhibited autophagosome turnover resulting in a dysfunctional autophagic process, including impaired lysosomal fusion. Together, these results suggest that haloperidol and clozapine negatively affect neuronal viability, possibly by blocking autophagolysosome formation.
Nat Protoc. 2012 ;7 (3):562-78
22383036
Cole Trapnell,
Adam Roberts,
Loyal Goff,
Geo Pertea,
Daehwan Kim,
David R Kelley,
Harold Pimentel,
Steven L Salzberg,
John L Rinn,
Lior Pachter
1] Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.[2] Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, USA.
Recent advances in high-throughput cDNA sequencing (RNA-seq) can reveal new genes and splice variants and quantify expression genome-wide in a single assay. The volume and complexity of data from RNA-seq experiments necessitate scalable, fast and mathematically principled analysis software. TopHat and Cufflinks are free, open-source software tools for gene discovery and comprehensive expression analysis of high-throughput mRNA sequencing (RNA-seq) data. Together, they allow biologists to identify new genes and new splice variants of known ones, as well as compare gene and transcript expression under two or more conditions. This protocol describes in detail how to use TopHat and Cufflinks to perform such analyses. It also covers several accessory tools and utilities that aid in managing data, including CummeRbund, a tool for visualizing RNA-seq analysis results. Although the procedure assumes basic informatics skills, these tools assume little to no background with RNA-seq analysis and are meant for novices and experts alike. The protocol begins with raw sequencing reads and produces a transcriptome assembly, lists of differentially expressed and regulated genes and transcripts, and publication-quality visualizations of analysis results. The protocol's execution time depends on the volume of transcriptome sequencing data and available computing resources but takes less than 1 d of computer time for typical experiments and ∼1 h of hands-on time.
Head Neck. 2012 Feb 24;:
22367747
Boban M Erovic,
David P Goldstein,
Dae Kim,
Ayman Al Habeeb,
John Waldron,
Danny Ghazarian,
Jonathan C Irish
Departments of Otolaryngology - Head and Neck Surgery/Surgical Oncology, Princess Margaret Hospital, University of Toronto, Toronto, Canada.
BACKGROUND: The purpose of this study was to identify prognostic factors predicting outcomes in sebaceous gland carcinomas. METHODS: We conducted a retrospective medical chart review of patients with sebaceous carcinomas of periorbital (n = 33) and extraorbital sites (n = 13). RESULTS: Patients with periorbital tumors had higher recurrence rates than did patients with extraorbital tumors (64% vs 23%; p =.032). Patients who were older than 60 years (p =.035) and had lower eyelid tumors (p <.0001) had a lower disease-free survival rate than did patients with upper eyelid tumors. Patients with sebaceous carcinomas had a high rate (60%) of occult lymph node metastases. CONCLUSION: Periorbital tumors are associated with poorer outcomes than are extraorbital tumors. Lower eyelid carcinomas have the worst prognosis and should be treated more aggressively. Our findings of a high incidence of occult neck disease and a high rate of regional recurrence in patients with sebaceous carcinomas support the consideration of prophylactic elective neck dissections for treating such patients. © 2012 Wiley Periodicals, Inc. © 2012 Wiley Periodicals, Inc. Head Neck, 2012.
Oncogene. 2012 Feb 13;:
22330135
J Guo,
D Kim,
J Gao,
C Kurtyka,
H Chen,
C Yu,
D Wu,
A Mittal,
A A Beg,
S P Chellappan,
E B Haura,
J Q Cheng
Department of Molecular Oncology, H Lee Moffitt Cancer Center, Tampa, FL, USA.
Serine/threonine kinase IKBKE is a newly identified oncogene; however, its regulation remains elusive. Here, we provide evidence that IKBKE is a downstream target of signal transducer and activator of transcription 3 (STAT3) and that tobacco components induce IKBKE expression through STAT3. Ectopic expression of constitutively active STAT3 increased IKBKE mRNA and protein levels, whereas inhibition of STAT3 reduced IKBKE expression. Furthermore, expression levels of IKBKE are significantly associated with STAT3 activation and tobacco use history in non-small cell lung cancer (NSCLC) patients examined. In addition, we show induction of IKBKE by two components of cigarette smoke, nicotine and nicotine-derived nitrosamine ketone (NNK). Upon exposure to nicotine or NNK, cells express high levels of IKBKE protein and mRNA, which are largely abrogated by inhibition of STAT3. Characterization of the IKBKE promoter revealed two STAT3-response elements. The IKBKE promoter directly bound to STAT3 and responded to nicotine and NNK stimulation. Notably, enforcing expression of IKBKE induces chemoresistance, whereas knockdown of IKBKE not only sensitizes NSCLC cells to chemotherapy but also abrogates STAT3- and nicotine-induced cell survival. These data indicate for the first time that IKBKE is a direct target of STAT3 and is induced by tobacco carcinogens through STAT3 pathway. In addition, our study also suggests that IKBKE is an important therapeutic target and could have a pivotal role in tobacco-associated lung carcinogenesis.Oncogene advance online publication, 13 February 2012; doi:10.1038/onc.2012.39.
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