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Latest Paper:
Peter T Pesenti,
Masoumeh Sikaroodi,
Patrick M Gillevet,
Cristina Sánchez-Porro,
Antonio Ventosa,
Carol D Litchfield
Department of Environmental Science and Policy, George Mason University, Manassas, VA 20110, USA.
A motile, rod-shaped, pink-pigmented, extremely halophilic archaeon, strain SF3-213(T), was isolated from a crystallizer pond at the Cargill Solar Salt Plant, Newark, California (USA). Analysis of the almost-complete 16S rRNA gene sequence showed that the isolate was phylogenetically related to species of the genus Halorubrum, with a close relationship to Halorubrum trapanicum NRC 34021(T)(98.6 % similarity), Halorubrum sodomense ATCC 33755(T) (98.3 %) and Halorubrum xinjiangense AS 1.3527(T)(98.2 %). The polar lipids of strain SF3-213(T) were C(20)C(20) derivatives of phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester, phosphatidylglycerol sulfate and a sulfated diglycosyl-diether. Strain SF3-213(T) grew in 2.5-5. M NaCl. The temperature and pH ranges for growth were 25-42 degrees C and 6.8-8.5, respectively. Optimal growth occurred at 3.5-4.5 M NaCl, 37 degrees C and pH 7.3. Mg(2+) was required for growth. The DNA G+C content was 69.4 mol%. DNA-DNA hybridization values lower than 70 % were obtained between strain SF3-213(T) and the closely related species of the genus Halorubrum. Based on the data presented in this study, strain SF3-213(T) represents a novel species for which the name Halorubrum californiense sp. nov. is proposed; the type strain is SF3-213(T)(=CECT 7256(T)=DSM 19288(T)=JCM 14715(T)).
David R Arahal,
Russell H Vreeland,
Carol D Litchfield,
Melanie R Mormile,
Brian J Tindall,
Aharon Oren,
Victoria Bejar,
Emilia Quesada,
Antonio Ventosa
Following Recommendation 30b of the Bacteriological Code (1990 Revision), a proposal of minimal standards for describing new taxa within the family Halomonadaceae is presented. An effort has been made to evaluate as many different approaches as possible, not only the most conventional ones, to ensure that a rich polyphasic characterization is given. Comments are given on the advantages of each particular technique. The minimal standards are considered as guidelines for authors to prepare descriptions of novel taxa. The proposals presented here have been endorsed by the International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Halomonadaceae.
Department of Biochemistry and Biophysics, Texas A & M University, College Station, Texas 77843.
Twenty-nine cultures isolated from nonaxenic growths of Chlorella sorokiniana (Shihira and Krauss) and eight reference cultures were tested for 150 morphological and biochemical characteristics. The taxonomic data were subjected to computer analysis from which five major clusters were identified. The bacterial isolates have been placed in the genera: Pseudomonas, Acinetobacter, Flavobacterium, and Bacillus. Amino acid requirements of four strains from the test set were determined.
Department of Biology, 4400 University Drive, George Mason University, Fairfax, VA 22030, USA. millsd@fiu.edi
Amplicon length heterogeneity PCR (LH-PCR) and terminal restriction fragment length polymorphisms (TRFLP) were used to monitor the impact that nutrient amendments had on microbial community dynamics and structural diversity during bioremediation of petroleum-contaminated soils. Slurried soils contaminated with petroleum hydrocarbons were treated in airlift bench-scale bioreactors and were either amended with optimal inorganic nutrients or left unamended. Direct DNA extraction and PCR amplification of whole eubacterial community DNA were performed with universal primers that bracketed the first two or three hypervariable regions of the 16S rDNA gene sequences. The LH-PCR method profiled a more diverse microbial community than did the TRFLP method. The LH-PCR method also tracked differences between the communities due to nutrient amendments. An in silico database search for bacterial genera with amplicon lengths represented in the community fingerprints was performed. It was possible to qualitatively identify different groups in the microbial community based on the amplicon length variations. A similar "virtual" search was performed for the TRFLP fragments using the web-based TAP-TRFLP program. Cloning and sequencing of the PCR products confirmed the in silico database matches. The application of the LH-PCR method as a monitoring tool for bioremediation could greatly enhance and extend the current understanding of the microbial community dynamics during the biodegradation of environmental contaminants.
Mesh-terms: Bacteria :: classification; Bacteria :: genetics; Bacteria :: growth & development; Bacteria :: metabolism; Biodegradation; Bioreactors; Comparative Study; Culture Media; DNA, Bacterial :: analysis; DNA, Bacterial :: isolation & purification; Ecosystem; Petroleum :: metabolism; Polymerase Chain Reaction :: methods; Polymorphism, Restriction Fragment Length; Reproducibility of Results; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S. ; Soil Microbiology; Soil Pollutants :: metabolism; Support, Non-U.S. Gov't; Support, U.S. Gov't, Non-P.H.S. ;
Department of Biology, MS 3E1, George Mason University, Fairfax, VA 22030, USA.
The microbial communities in solar salterns and a soda lake have been characterized using two techniques: BIOLOG, to estimate the metabolic potential, and amplicon length heterogeneity analysis, to estimate the molecular diversity of these communities. Both techniques demonstrated that the halophilic Bacteria and halophilic Archaea populations in the Eilat, Israel saltern are dynamic communities with extensive metabolic potentials and changing community structures. Halophilic Bacteria were detected in Mono Lake and the lower salinity ponds at the Shark Bay saltern in Western Australia, except when the crystallizer samples were stressed by exposure to Acid Green Dye #9899. At Shark Bay, halophilic Archaea were found only in the crystallizer samples. These data confirm both the metabolic diversity and the phylogenetic complexity of the microbial communities and assert the need to develop more versatile media for the cultivation of the diversity of bacteria in hypersaline environments.
Mesh-terms: Archaea :: genetics; Archaea :: isolation & purification; Archaea :: metabolism; Carbon Dioxide :: metabolism; Colony Count, Microbial; DNA Fingerprinting; Ecosystem; Halobacteriales :: genetics; Halobacteriales :: isolation & purification; Halobacteriales :: metabolism; Seawater :: chemistry; Seawater :: microbiology; Sodium Chloride; Support, Non-U.S. Gov't; Support, U.S. Gov't, Non-P.H.S. ; Water Microbiology;
Department of Biology, George Mason University, Fairfax, VA 22030, USA.
Department of Biology, George Mason University, Fairfax, Virginia 22030, USA. clitchfi@wpgate.gmu.edu
There are two groups of microorganisms that live and grow in hypersaline (>10-15% NaCl) environments: the halophilic Archaea and the halotolerant Bacteria and algae. In order to grow and reproduce in such high-salt, low-water activity environments, these organisms have made basic biochemical adaptations in their proteins, osmoregulation mechanisms, nucleic acids, and lipids. The environment of the halophiles and especially how the halophilic Archaea have adapted to that environment are reviewed in this paper. Along with this review is a brief description of how these adaptations could be important in the detection of life on early Mars assuming similar types of salts and a carbon-based life.
Mesh-terms: Adaptation, Biological; Adaptation, Physiological; Archaeal Proteins :: metabolism; Bacterial Proteins :: metabolism; Environmental Microbiology; Exobiology; Halobacteriales :: metabolism; Halobacteriales :: radiation effects; Hydrogen-Ion Concentration; Ions; Light; Lipids :: metabolism; Mars; Nucleic Acids :: metabolism; Osmotic Pressure; Oxygen :: metabolism; Seawater :: chemistry; Sodium Chloride :: chemistry; Support, Non-U.S. Gov't; Temperature;
Department of Biology, George Mason University, Fairfax, VA 22030-4444, USA. clitchfi@wpgate.gmu.edu
The whole community pigments and lipids have been examined during a 5-year period in two commercial solar salterns located in the United States and in Israel. There were significant differences in the complexity of the lipid and pigment patterns within the California saltern system, and these differences were not consistent over the sampling period despite examination of ponds with the same salinity. The solar saltern system in Eilat, Israel, showed greater consistency during this sampling period and compared directly with previous studies. The complexity of the saltern in Newark, California, could be explained on the basis of the prevailing weather conditions (cooler and more rainfall) and the nutrient-enriched source water. The Eilat saltern, however, has an oligotrophic water source and has a considerably warmer and drier climate. This difference resulted in more diverse and more complex pigment and lipid patterns and presumably microbial populations in the Newark, California, plant than in the saltern in Eilat, Israel.
Mesh-terms: Biomass; California; Chromatography, High Pressure Liquid; Chromatography, Thin Layer; Climate; Comparative Study; Halobacteriaceae :: chemistry; Halobacteriaceae :: classification; Israel; Lipids :: analysis; Lipids :: chemistry; Pigments :: analysis; Pigments :: chemistry; Salts :: analysis; Salts :: isolation & purification; Seasons; Seawater :: chemistry; Seawater :: microbiology; Spectrophotometry; Support, Non-U.S. Gov't; Support, U.S. Gov't, Non-P.H.S. ; Water Microbiology;
