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Latest Paper:
PLoS One. 2012 ;7 (5):e36938
22590637
Alak Manna,
Piu Saha,
Avijit Sarkar,
Debanjan Mukhopadhyay,
Ajay K Bauri,
Deepak Kumar,
Padma Das,
Subrata Chattopadhyay,
Mitali Chatterjee
Department of Pharmacology, Institute of Post Graduate Medical Education and Research, Kolkata, West Bengal, India.
BACKGROUND The 'two-faced' character of reactive oxygen species (ROS) plays an important role in cancer biology by acting both as secondary messengers in intracellular signaling cascades and sustaining the oncogenic phenotype of cancer cells, while on the other hand, it triggers an oxidative assault that causes a redox imbalance translating into an apoptotic cell death. PRINCIPAL FINDINGS Using a tetrazolium [{3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl}-2H-tetrazolium] based cell viability assay, we evaluated the cytotoxicity of a plant derived diarylnonanoid, malabaricone-A on leukemic cell lines U937 and MOLT-3. This cytotoxicity hinged on its ability to cause a redox imbalance via its ability to increase ROS, measured by flow cytometry using 5-(and-6)-chloromethyl-2',7'-dichlorodihydrofluorescein diacetate and by decreasing glutathione peroxidase activity. This redox imbalance mediated apoptosis was evident by an increase in cytosolic [Ca(2+)], externalization of phosphatidyl serine as also depolarization of the mitochondrial membrane potential as measured by flow cytometry. There was concomitant peroxidation of cardiolipin, release of free cytochrome c to cytosol along with activation of caspases 9, 8 and 3. This led to cleavage of the DNA repair enzyme, poly (ADP-ribose) polymerase that caused DNA damage as proved by labeling with 4',6-diamidino-2-phenylindole (DAPI); furthermore, terminal deoxy ribonucleotide transferase catalysed incorporation of deoxy uridine triphosphate confirmed DNA nicking and was accompanied by arrest of cell cycle progression. CONCLUSIONS Taken together, compounds like MAL-A having pro-oxidant activity mediate their cytotoxicity in leukemic cells via induction of oxidative stress triggering a caspase dependent apoptosis.
J Trop Pediatr. 2012 Mar 19;:
22431185
B.S. Medical College, Bankura, West Bengal, India.
A cross-sectional study was undertaken among 2068 school-going adolescents of a subdistrict area of West Bengal, India for assessment of entire array of risk behaviors and their correlates. Aggressive, suicidal, substance use and sexual risk behaviors were measured using a self-administered, multi-item, validated questionnaire in the local vernacular. Prevalence of physical fights, weapon carrying in the last 30 days and gang fights in the last 12 months were 27.1%, 7.3% and 13.0%, respectively. Current users of tobacco, alcohol and illicit substances were 7.1%, 3.4% and 2.0%, respectively. Suicidal ideation and attempts were reported by 11.7% and 3.5% of students. Almost one-tenth of respondents had premarital sexual intercourse. Male gender, low subjective economic status, exposure to electronic media and poor academic achievements were associated with most of the studied risk behaviors, except that females showed more propensities to suicidal behavior. The magnitude and pattern of adolescent risk behaviors, though less studied in India, warrants urgent, coordinated actions.
Department of Pharmacology, Institute of Postgraduate Medical Education & Research, 244 B Acharya JC Bose Road, Kolkata 700 020, India.
Vitam Horm. 2012 ;88 :439-59
22391315
Since its identification Patched1 (Ptch1) has gained importance for playing a cardinal role in developmental patterning through Hedgehog (Hh) pathway, acting as a transmembrane receptor. Involvement of this protein in diverse aspects of the neuronal system, from development to regeneration and protection, including uncontrolled proliferation in oncogenic perspectives, makes it an intriguing candidate for investigation in neurobiology. Stem cell population of adult nervous system is also found to be regulated by Ptch1. Though not elaborately studied, research in this field for the past one decade has suggested a new spectrum of Ptch1 function through an alternative route independent of Hh. In this chapter, the available knowledge about Ptch1 in neuronal system is critically reviewed and further functional insights about this protein are evaluated.
Nano Lett. 2012 Feb 29;:
22375622
Several applications of single walled carbon nanotubes (SWCNT) as nanovectors in biological systems have been reported, and several molecular pathways of cellular entry have been proposed. We employed transmission electron microscopy, confocal fluorescent microscopy, and UV-Vis spectroscopic analysis to confirm the internalization of DNA-SWCNT in human umbilical vein endothelial cells (HUVEC). Additionally, by using pharmacological inhibitors as well as genetic approaches, we have found that SWCNT is endocytosed through Rac1- GTPase mediated macropinocytosis in normal endothelial cells.
Blood. 2012 May 17;119 (20):4798-806
22343917
Resham Bhattacharya,
Enfeng Wang,
Shamit K Dutta,
Pawan K Vohra,
Guangqi E,
Y S Prakash,
Debabrata Mukhopadhyay
Departments of Biochemistry and Molecular Biology, and.
The Na(+)/H(+) exchanger regulatory factor-2 (NHERF-2) is an integral component of almost all endothelial cells (ECs), yet its endothelial function is not known. Here, we found that NHERF-2, is a key regulator of endothelial homeostasis because NHERF-2-silenced ECs proliferate at a much higher rate even in the absence of mitogens such as VEGF compared with control ECs. We further show that the hyperproliferation phenotype of NHERF-2-silenced EC is because of an accelerated cell cycle that is probably caused by a combination of the following factors: increased cytoplasmic calcium, increased expression of c-Myc, increased expression of cyclin D1, and reduced expression of p27. Using an experimental mouse model of human hemangioma, we found that the endothelial neoplasms derived from NHERF-2-silenced cells were much larger in volume than those derived from control cells. Thus, NHERF-2 is a negative regulator of endothelial proliferation and may have important roles in endothelial homeostasis and vascular modeling.
Department of Chemistry, University of Calcutta, Kolkata-700009, India.
We follow a suggestion by Lipoff and Herschbach [Mol. Phys. 108, 1133 (2010)] and compare dressed and bare adiabatic potentials to get insight regarding the low-energy dynamics (e.g., cold reaction) taking place in molecular systems. In this particular case, we are interested to study the effect of conical intersections (ci) on the interacting atoms. For this purpose, we consider vibrational dressed adiabatic and vibrational dressed diabatic potentials in the entrance channel of reactive systems. According to our study, the most one should expect, in case of F + H(2), is a mild effect of the (1, 2) ci on its reactive/exchange process--an outcome also supported by experiment. This happens although the corresponding dressed and bare potential barriers (and the corresponding van der Waals potential wells) differ significantly from each other.
Department of Chemistry, University of Calcutta, Kolkata 700009, India.
Demonstration of onset of Jahn-Teller (JT) intersections, characterized by a topological phase of π, on introduction of bending in the collinear tetra-atomic C(2)H(2)(+) cation, originally a Renner-Teller (RT) system, has raised interest in the study of the generality of this phenomenon. This interest has initiated similar study by shifting one external light atom from the collinear molecular axes of systems such as HCNH and HC(2)O. Recent studies have revealed that slightly bent HCNH poses a specialty in this regard and thus demands focused attention. In the present work we performed a combined study using both the potential intersections and the angular nonadiabatic coupling terms (NACTs) and report two new results:(i) The first result is the appearance of the JT conical intersections (ci's) between the two lowest states of a slightly bent HCNH molecule (1(2)A' and 1(2)A", originated from collinear X(2)Π state) only with certain nonplanar configurations, in contrast to its appearance in C(S) configuration space (molecular plane) for slightly bent C(2)H(2)(+), HC(2)O, or some other tetra-atomics. This is also associated with the first time demonstration of Berry phase for such a single isolated ci for HCNH molecule.(ii) For energetically higher potentials of slightly bent HCNH, the present study reveals the existence of the intersection of the state 1(2)A" with the state 2(2)A'(originated from the collinear 1(2)Σ(+) state); in contrast to the (1,2) ci this appears in the molecular plane. The search for ci's has been performed by varying the distances of the two H-atoms (designated as H(C) and H(N)) from the C-N axis as well as the dihedral angle φ between the two planes (H(C),C,N) and (C,N,H(N)). Existence of these JT ci's results in deterioration of a two-state Hilbert subspace (HSS) model in diabatization, while the proper choice of an n (>2)-state HSS circumvents this problem.
Chitta Ranjan Patra,
Chamila N Rupasinghe,
Shamit K Dutta,
Santanu Bhattacharya,
Enfeng Wang,
Mark R Spaller,
Debabrata Mukhopadhyay
Department of Biochemistry and Molecular Biology and ∥Department of Biomedical Engineering, Mayo Clinic , Rochester, Minnesota, United States.
GIPC (GAIP-interacting protein, C terminus) represents a new target class for the discovery of chemotherapeutics. While many of the current generation of anticancer agents function by directly binding to intracellular kinases or cell surface receptors, the disruption of cytosolic protein-protein interactions mediated by non-enzymatic domains is an underdeveloped avenue for inhibiting cancer growth. One such example is the PDZ domain of GIPC. Previously we developed a molecular probe, the cell-permeable octapeptide CR1023 (N-myristoyl-PSQSSSEA), which diminished proliferation of pancreatic cancer cells. We have expanded upon that discovery using a chemical modification approach and here report a series of cell-permeable, side chain-modified lipopeptides that target the GIPC PDZ domain in vitro and in vivo. These peptides exhibit significant activity against pancreatic and breast cancers, both in cellular and animal models. CR1166 (N-myristoyl-PSQSK(εN-4-bromobenzoyl)SK(εN-4-bromobenzoyl)A), bearing two halogenated aromatic units on alternate side chains, was found to be the most active compound, with pronounced down-regulation of EGFR/1GF-1R expression. We hypothesize that these organic acid-modified residues extend the productive reach of the peptide beyond the canonical binding pocket, which defines the limit of accessibility for the native proteinogenic sequences that the PDZ domain has evolved to recognize. Cell permeability is achieved with N-terminal lipidation using myristate, rather than a larger CPP (cell-penetrating peptide) sequence. This, in conjunction with optimization of targeting through side chain modification, has yielded an approach that will allow the discovery and development of next-generation cellular probes for GIPC PDZ as well as for other PDZ domains.
J Immunol. 2012 Jan 13;:
22246626
Xi Zhao,
Anamika Bose,
Hideo Komita,
Jennifer L Taylor,
Nina Chi,
Devin B Lowe,
Hideho Okada,
Ying Cao,
Debabrata Mukhopadhyay,
Peter A Cohen,
Walter J Storkus
Department of Dermatology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213;
We have recently shown that effective cytokine gene therapy of solid tumors in HLA-A2 transgenic (HHD) mice lacking murine MHC class I molecule expression results in the generation of HLA-A2-restricted CD8(+) T effector cells selectively recognizing tumor blood vessel-associated pericytes and/or vascular endothelial cells. Using an HHD model in which HLA-A2(neg) tumor (MC38 colon carcinoma or B16 melanoma) cells are not recognized by the CD8(+) T cell repertoire, we now show that vaccines on the basis of tumor-associated blood vessel Ags (TBVA) elicit protective Tc1-dependent immunity capable of mediating tumor regression or extending overall survival. Vaccine efficacy was not observed if (HLA-A2(neg)) wild-type C57BL/6 mice were instead used as recipient animals. In the HHD model, effective vaccination resulted in profound infiltration of tumor lesions by CD8(+)(but not CD4(+)) T cells, in a coordinate reduction of CD31(+) blood vessels in the tumor microenvironment, and in the "spreading" of CD8(+) T cell responses to alternate TBVA that were not intrinsic to the vaccine. Protective Tc1-mediated immunity was durable and directly recognized pericytes and/or vascular endothelial cells flow-sorted from tumor tissue but not from tumor-uninvolved normal kidneys harvested from these same animals. Strikingly, the depletion of CD8(+), but not CD4(+), T cells at late time points after effective therapy frequently resulted in the recurrence of disease at the site of the regressed primary lesion. This suggests that the vaccine-induced anti-TBVA T cell repertoire can mediate the clinically preferred outcomes of either effectively eradicating tumors or policing a state of (occult) tumor dormancy.
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