BioInfoBank Library


FP7 Partner
Add BioInfo.PL bioinformatics lab to Your FP7 application
author name recommending commenting favorite    papers recom. cited
0 0 0 1 0 0 [Update]
0 0 0 1 0 0 [Update]
0 0 0 1 0 0 [Update]
0 0 0 1 0 7 [Update]
0 0 0 1 0 0 [Update]
0 0 0 1 0 0 [Update]
0 0 0 1 0 0 [Update]
1 0 0 4 1 0 [Update]
0 0 0 7 0 3 [Update]
0 0 0 1 0 0 [Update]
0 0 0 2 0 0 [Update]
0 0 0 1 0 9 [Update]
0 0 0 1 0 0 [Update]
0 0 0 1 0 2 [Update]
0 0 0 6 0 53 [Update]
0 0 0 1 0 0 [Update]
0 0 0 11 0 18 [Update]
0 0 0 5 0 0 [Update]
0 0 0 2 0 0 [Update]
0 0 0 1 0 0 [Update]
0 0 0 2 0 0 [Update]

Latest Paper:

Biol Lett. 2009 Mar 4;: 19324635 (P,S,G,E,B,D)
Department of Integrative Biology, University of GuelphGuelph, Ontario, Canada N1G 2W1.
It has long been recognized that bats and birds contain less DNA in their genomes than their non-flying relatives. It has been suggested that this relates to the high metabolic demands of powered flight, a notion that is supported by the fact that pterosaurs also appear to have exhibited small genomes. Given the long-standing interest in this question, it is surprising that almost no data have been presented regarding genome size diversity among megabats (family Pteropodidae). The present study provides genome size estimates for 43 species of megabats in an effort to fill this gap and to test the hypothesis that all bats, and not just microbats, possess small genomes. Intriguingly, megabats appear to be even more constrained in terms of genome size than the members of other bat families.
Arch Ophthalmol. 2009 Jan ;127 (1):66-70 19139340 (P,S,G,E,B,D)
LuEsther T Mertz Retina Research Laboratory, Manhattan Eye, Ear, and Throat Hospital, New York, New York, USA. hffine@gmail.com
OBJECTIVE: To describe cases of acute zonal occult outer retinopathy (AZOOR) in patients previously diagnosed as having multiple evanescent white dot syndrome (MEWDS). METHODS: In a retrospective case series, we studied fundus photographs, fundus autofluorescence images, optical coherence tomographic scans, fluorescein and indocyanine green angiograms, visual fields, and results of electroretinography. RESULTS: Three patients diagnosed as having MEWDS developed clinical, angiographic, autofluorescence, visual field, and/or electrophysiologic evidence of AZOOR. Spectral domain optical coherence tomographic findings disclosed attenuation of the photoreceptor inner segment-outer segment junction in areas of AZOOR involvement. In 1 patient, hyperautofluorescence on fundus autofluorescence images during the MEWDS episode coincided with the area of involvement of AZOOR. CONCLUSIONS: Development of AZOOR may occur in patients with MEWDS, suggesting that the conditions may share a common genetic susceptibility and/or pathogenetic factor. Although the typical visual prognosis after MEWDS is excellent, subsequent diagnosis of AZOOR may portend a worse outcome.
Soc Neurosci. 2008 May 28;:1-19 18633836 (P,S,G,E,B)
Northwestern University, Evanston, IL, USA.
Previous tests of P300 in deception detection have focused mainly on amplitude analysis. Since countermeasures for such tests have been reported, we looked here at other possible variables as deception indices: P300 scalp distribution and amplitude variance, both across 30 sites. We were also concerned, for the first time, in testing for recognition of more than one guilty item in a mock crime scenario. There were three groups:(1) two-probe group, two of six items were guilty knowledge (GK) items;(2) three-probe group, three of six items were GK items;(3) control group, zero of six items were GK items. In group analyses, in the two-probe group, P300s for lies were significantly greater than P300s for truthful responses. There were significant interactions of condition (Lie vs Truth) by site, suggesting different scalp profiles for deceptive versus truthful responding. Amplitude variance across sites was also greater in Lie than in Truth blocks. These results did not obtain in the three-probe and control groups. In terms of amplitude variances in probe conditions across groups, two-probe group was larger than three-probe and control groups. Regarding individual diagnostics, the variance method yielded a greater-than-chance detection rate of 71% versus 28% false positives. Regarding amplitude at multiple nonfrontal sites, 71% of guilty subjects were detected versus 14% false positives. Grier's (1971) A' indices of various test discrimination efficiencies varied from .76 to .87. Results of the present study suggested further investigation of the variance method as a diagnostic tool for lie detection.
Retina. 2008 Jul 3;: 18626420 (P,S,G,E,B,D)
Edwin Ryan Jr
From the VitreoRetinal Surgery, Pennsylvania, Edina, MN.
Keywords:
Retina. 2008 May ;28 (5):675-681 18463509 (P,S,G,E,B,D) Cited:7
From *Barnes Retina Institute, St. Louis, Missouri; the †Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, Missouri; ‡the Retina Group of Florida, Ft. Lauderdale, Florida; and §Vitreoretinal Surgery, PA, Edina, Minnesota.
PURPOSE:: To report the outcome for eyes treated with intravitreal injection of bevacizumab combined with verteporfin photodynamic therapy (PDT) for choroidal neovascularization (CNV) in age-related macular degeneration (AMD). STUDY DESIGN AND PARTICIPANTS:: Interventional, consecutive, retrospective case series including 40 eyes of 40 patients with newly diagnosed juxtafoveal or subfoveal CNV secondary to AMD. METHODS:: The charts of patients treated with a 1.25-mg intravitreal injection of bevacizumab followed by PDT within a 2-week period were reviewed. Main outcome measures were visual acuity stabilization (defined as no change or a gain in visual acuity) and need for retreatment. RESULTS:: Thirty-three (83%) of 40 eyes had stabilization of visual acuity. Mean improvement in visual acuity was 1.73 lines. Twenty-six eyes (65%) required only a single intravitreal injection of bevacizumab combined with PDT. Of the 23 eyes with 12 months of follow-up, 17 (74%) had stabilization of visual acuity, while 9 (40%) had improvement in visual acuity (mean, 1.22 Snellen lines). Eleven eyes (48%) required only a single combined treatment for CNV resolution at the 12-month follow-up. Fifteen (88%) of 17 eyes with only 6 months of follow-up required only a single combined treatment. There were no complications such as endophthalmitis, uveitis, or ocular hypertension. CONCLUSION:: These findings suggest that eyes treated with both intravitreal injection of bevacizumab and PDT require none to a minimal number of re-treatments to have stabilization of vision, even at 12 months of follow-up. Further investigation with large controlled trials is warranted to outline the appropriate treatment paradigm for combination therapy.
Retina. 2008 Apr ;28 (4):622-627 18398366 (P,S,G,E,B,D)
From *VitreoRetinal Surgery, PA, Edina, Minnesota; and †QLT, Inc., Vancouver, British Columbia, Canada.
PURPOSE:: To demonstrate a method for creating individualized laser exposure patterns for verteporfin photodynamic therapy (PDT) for peripapillary, juxtafoveal, and irregularly shaped lesions. METHODS:: Laser beams from commercially available PDT lasers (Lumenis Opal [Lumenis, Inc., Yokneam, Israel (formerly Coherent Medical Group, Palo Alto, CA)] and Zeiss Visulas 690s [Carl Zeiss Jena GmbH, Jena, Germany] were masked using different patterns and household materials. The masking was tested for percentage of light transmission, fluence rate across the masked treatment area, and intensity drop-off at the edge of the mask. RESULTS:: Of the materials tested, electrical tape was completely opaque, black card stock allowed 0.6% measured transmission, and yellow paper allowed 18% transmission of laser light. For the Lumenis Opal laser, the ratio of mask size to image size at the slit-lamp focal plane was 1:1. For the Zeiss Visulas laser, the ratio was 2:1; however, the exact ratio of the mask size to the image size was dependent on the spot size setting used. Unmasked areas of laser light had the expected fluence rate (i.e., no masking effect). The intensity drop-off at the mask edge was equivalent to the edge of the unmasked beam. CONCLUSION:: Masks that individualize laser exposure patterns during PDT would allow safe treatment of irregular lesions and limit exposure of healthy tissue to risks of treatment.
Neurology. 2008 Mar 25;70 (13 Pt 2):1153-5 18362275 (P,S,G,E,B,D)
MMC 493, 420 Delaware St. SE, Minneapolis, MN 55455; mikelee@umn.edu.
Keywords:
Zoology (Jena). 2008 Mar 5;: 18328681 (P,S,G,E,B,D) Recommended:1
Museum of Vertebrate Zoology, 3101 Valley Life Sciences Bldg., University of California, Berkeley, CA 94720-3160, USA; Integrative Biology Department, 3060 Valley Life Sciences Bldg., University of California, Berkeley, CA 94720, USA; Department of Biology, Colorado State University, Fort Collins, CO 80523, USA.
Within the salamander family Plethodontidae, five different clades have evolved high levels of enucleated red blood cells, which are extremely unusual among non-mammalian vertebrates. In each of these five clades, the salamanders have large genomes and miniaturized or attenuated body forms. Such a correlation suggests that the loss of nuclei in red blood cells may be related, in part, to the interaction between large genome size and small body size, which has been shown to have profound morphological consequences for the nervous and visual systems in plethodontids. Previous work has demonstrated that variation in both the level of enucleated cells and the size of the nuclear genome exists among species of the monophyletic plethodontid genus Batrachoseps. Here, we report extensive intraspecific variation in levels of enucleated red blood cells in 15 species and provide measurements of red blood cell size, nucleus size, and genome size for 13 species of Batrachoseps. We present a new phylogenetic hypothesis for the genus based on 6150bp of mitochondrial DNA sequence data from nine exemplar taxa and use it to examine the relationship between genome size and enucleated red blood cell morphology in a phylogenetic framework. Our analyses demonstrate positive direct correlations between genome size, nucleus size, and both nucleated and enucleated cell sizes within Batrachoseps, although only the relationship between genome size and nucleus size is significant when phylogenetically independent contrasts are used. In light of our results and broader studies of comparative hematology, we propose that high levels of enucleated, variably sized red blood cells in Batrachoseps may have evolved in response to rheological problems associated with the circulation of large red blood cells containing large, bulky nuclei in an attenuate organism.
Mayo Clin Proc. 2008 Feb ;83 (2):231-4 18241635 (P,S,G,E,B)
Department of Ophthalmology, Mayo Clinic, 200 First St SW, Rochester, MN (pulido.jose@mayo.edu).
Angiogenesis is a common factor in the pathogenesis of cancer and in exudative age-related macular degeneration (AMD). Therefore, angiogenesis inhibition has been developed as a therapeutic strategy. We report 2 cases of recurrent exudative AMD in which oral sorafenib, a tyrosine kinase inhibitor approved for cancer, was added to intravitreal ranibizumab, an antibody to vascular endothelial growth factor. These 2 patients were followed up by determination of visual acuity, fluorescein angiography, fundoscopy, and optical coherence tomography. The visual acuity of 1 patient improved from 20/70 to 20/60 while he was receiving sorafenib therapy; that of the other did not. Marked improvement was noted in both patients on optical coherence tomography. Additionally, both patients appeared to receive some benefit when low-dose oral sorafenib was used as monotherapy after its initial addition to ranibizumab therapy. Randomized trials of adding sorafenib to standard therapy for patients with neovascular AMD should be considered.
Retina. 2007 Mar ;27 (3):290-295 17460583 (P,S,G,E,B,D) Cited:1
From *Pacific Vision Foundation, California Pacific Medical Center, San Francisco, California; †Retina Research Fund, St. Mary’s Medical Center, San Francisco, California; and ‡VitreoRetinal Surgery, P.A., Minneapolis, Minnesota.
PURPOSE:: To describe the clinical course of patients undergoing vitreoretinal procedures while receiving systemic anticoagulation with warfarin. METHODS:: We reviewed patient demographics, ocular findings, and clinical courses for 25 patients receiving systemic anticoagulation with warfarin who subsequently underwent vitreoretinal surgery. RESULTS:: Patient ages ranged from 49 years to 81 years (median, 69 years). Indications for anticoagulation included atrial fibrillation, cerebrovascular disease, deep vein thrombosis, prosthetic heart valves, and hypercoagulable state. Follow-up ranged from 4 months to 36 months (median, 19.5 months). The international normalized ratio ranged from 1.5 to 3.1 (median, 2.0). Final vision after surgery ranged from 20/20 to 20/400 (median, 20/100). One patient who underwent scleral buckling and external drainage of subretinal fluid had an intraoperative subretinal hemorrhage associated with the drainage procedure. In all other patients, no intraoperative complications occurred. CONCLUSION:: Cessation of therapy with warfarin may not be necessary in patients receiving anticoagulation who are undergoing vitreoretinal procedures. Successful visual and anatomical results may be achieved after vitreoretinal surgery for patients receiving anticoagulation with warfarin. The management of anticoagulation should occur in conjunction with the patient's internist to allow a clear understanding of the potential systemic risks of cessation of warfarin treatment preoperatively.
Science news