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Latest Paper:
PLoS Genet. 2012 May ;8 (5):e1002690
22589735
Chaitali Misra,
Nita Sachan,
Caryn Rothrock McNally,
Sara N Koenig,
Haley A Nichols,
Anuradha Guggilam,
Pamela A Lucchesi,
William T Pu,
Deepak Srivastava,
Vidu Garg
Center for Cardiovascular and Pulmonary Research and the Heart Center, Nationwide Children's Hospital, The Ohio State University, Columbus, Ohio, United States of America.
Defects of atrial and ventricular septation are the most frequent form of congenital heart disease, accounting for almost 50% of all cases. We previously reported that a heterozygous G296S missense mutation of GATA4 caused atrial and ventricular septal defects and pulmonary valve stenosis in humans. GATA4 encodes a cardiac transcription factor, and when deleted in mice it results in cardiac bifida and lethality by embryonic day (E)9.5. In vitro, the mutant GATA4 protein has a reduced DNA binding affinity and transcriptional activity and abolishes a physical interaction with TBX5, a transcription factor critical for normal heart formation. To characterize the mutation in vivo, we generated mice harboring the same mutation, Gata4 G295S. Mice homozygous for the Gata4 G295S mutant allele have normal ventral body patterning and heart looping, but have a thin ventricular myocardium, single ventricular chamber, and lethality by E11.5. While heterozygous Gata4 G295S mutant mice are viable, a subset of these mice have semilunar valve stenosis and small defects of the atrial septum. Gene expression studies of homozygous mutant mice suggest the G295S protein can sufficiently activate downstream targets of Gata4 in the endoderm but not in the developing heart. Cardiomyocyte proliferation deficits and decreased cardiac expression of CCND2, a member of the cyclin family and a direct target of Gata4, were found in embryos both homozygous and heterozygous for the Gata4 G295S allele. To further define functions of the Gata4 G295S mutation in vivo, compound mutant mice were generated in which specific cell lineages harbored both the Gata4 G295S mutant and Gata4 null alleles. Examination of these mice demonstrated that the Gata4 G295S protein has functional deficits in early myocardial development. In summary, the Gata4 G295S mutation functions as a hypomorph in vivo and leads to defects in cardiomyocyte proliferation during embryogenesis, which may contribute to the development of congenital heart defects in humans.
Cell Rep. 2012 Apr 19;1 (4):385-391
22570807
Chong Yon Park,
Lukas T Jeker,
Karen Carver-Moore,
Alyssia Oh,
Huey Jiin Liu,
Rachel Cameron,
Hunter Richards,
Zhongmei Li,
David Adler,
Yuko Yoshinaga,
Maria Martinez,
Michael Nefadov,
Abul K Abbas,
Art Weiss,
Lewis L Lanier,
Pieter J de Jong,
Jeffrey A Bluestone,
Deepak Srivastava,
Michael T McManus
UCSF Diabetes Center, San Francisco, CA 94143, USA.
The importance of miRNAs during development and disease processes is well established. However, most studies have been done in cells or with patient tissues, and therefore the physiological roles of miRNAs are not well understood. To unravel in vivo functions of miRNAs, we have generated conditional, reporter-tagged knockout-first mice for numerous evolutionarily conserved miRNAs. Here we report the generation of 162 miRNA targeting vectors, 64 targeted ES cell lines, and 46 germline-transmitted miRNA knockout mice. In vivo lacZ reporter analysis in 18 lines revealed highly tissue-specific expression patterns and their miRNA expression profiling matched closely with published expression data. Most miRNA knockout mice tested were viable, supporting a mechanism by which miRNAs act redundantly with other miRNAs or other pathways. These data and collection of resources will be of value for the in vivo dissection of miRNA functions in mouse models.
This article presents insight into the different types of asymmetrical Class III dentofacial deformities, their diagnoses, and the treatment modalities adopted by orthodontists and maxillofacial surgeons. In diagnosing facial and dental asymmetries, a thorough clinical examination and radiographic survey are necessary to determine the extent of the soft tissue, skeletal, dental, and functional involvement. The management of three cases of asymmetrical Class III dentofacial deformities is described. The optimal esthetic results and functional outcomes in the cases outlined were achieved by vertical and anteroposterior reduction with rotation of the mandible in conjunction with meticulously planned pre- and postsurgical orthodontic treatment. When choosing a surgical technique for correction of the problem, the structures involved in the asymmetry, the magnitude of asymmetry, and the patient's concerns and expectations must be taken into consideration.
Department of Gastroenterology, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow, India.
Nature. 2012 Apr 18;:
22522929
Li Qian,
Yu Huang,
C Ian Spencer,
Amy Foley,
Vasanth Vedantham,
Lei Liu,
Simon J Conway,
Ji-Dong Fu,
Deepak Srivastava
1] Gladstone Institute of Cardiovascular Disease, San Francisco, California 94158, USA [2] Department of Pediatrics, University of California, San Francisco, California 94158, USA [3] Department of Biochemistry and Biophysics, University of California, San Francisco, California 94158, USA.
The reprogramming of adult cells into pluripotent cells or directly into alternative adult cell types holds great promise for regenerative medicine. We reported previously that cardiac fibroblasts, which represent 50% of the cells in the mammalian heart, can be directly reprogrammed to adult cardiomyocyte-like cells in vitro by the addition of Gata4, Mef2c and Tbx5 (GMT). Here we use genetic lineage tracing to show that resident non-myocytes in the murine heart can be reprogrammed into cardiomyocyte-like cells in vivo by local delivery of GMT after coronary ligation. Induced cardiomyocytes became binucleate, assembled sarcomeres and had cardiomyocyte-like gene expression. Analysis of single cells revealed ventricular cardiomyocyte-like action potentials, beating upon electrical stimulation, and evidence of electrical coupling. In vivo delivery of GMT decreased infarct size and modestly attenuated cardiac dysfunction up to 3 months after coronary ligation. Delivery of the pro-angiogenic and fibroblast-activating peptide, thymosin β4, along with GMT, resulted in further improvements in scar area and cardiac function. These findings demonstrate that cardiac fibroblasts can be reprogrammed into cardiomyocyte-like cells in their native environment for potential regenerative purposes.
J Mol Biol. 2012 Apr 16;:
22516612
Dhiraj Srivastava,
Ranjan K Singh,
Michael A Moxley,
Michael T Henzl,
Donald F Becker,
John J Tanner
Department of Chemistry, University of Missouri-Columbia, Columbia, MO 65211, USA.
Type II hyperprolinemia is an autosomal recessive disorder caused by a deficiency in Δ1- pyrroline-5-carboxylate dehydrogenase (P5CDH, aka ALDH4A1), the aldehyde dehydrogenase that catalyzes the oxidation of glutamate semialdehyde to glutamate. Here we report the first structure of human P5CDH and investigate the impact of the hyperprolinemia-associated mutation of Ser352 to Leu on the structure and catalytic properties of the enzyme. The 2.5 Å resolution crystal structure of human P5CDH was determined using experimental phasing. Structures of the mutant enzymes S352A (2.4 Å) and S352L (2.85 Å) were determined to elucidate the structural consequences of altering Ser352. Structures of the 93%-identical mouse P5CDH complexed with sulfate ion (1.3 Å resolution), glutamate (1.5 Å), and NAD(+)(1.5 Å) were determined to obtain high resolution views of the active site. Together, the structures show that Ser352 occupies a hydrophilic pocket and is connected via water-mediated hydrogen bonds to catalytic Cys348. Mutation of Ser352 to Leu is shown to abolish catalytic activity and eliminate NAD+binding. Analysis of the S352A mutant shows that these functional defects are caused by the introduction of the nonpolar Leu352 side chain rather than the removal of the Ser352 hydroxyl. The S352L structure shows that the mutation induces a dramatic 8-Å rearrangement of the catalytic loop. Because of this conformational change, Ser349 is not positioned to interact with the aldehyde substrate, conserved Glu447 is no longer poised to bind NAD+, and Cys348 faces the wrong direction for nucleophilic attack. These structural alterations render the enzyme inactive.
Department of Pediatrics, University of California, San Francisco, San Francisco, California.
Congenital heart disease occurs in 1% of liveborn infants, making it the most common birth defect worldwide. Many of these children develop heart failure. In addition, both genetic and acquired forms of dilated cardiomyopathy are a significant source of heart failure in the pediatric population. Heart failure occurs when the myocardium is unable to meet the body's metabolic demands. Unlike some organs, the heart has limited, if any, capacity for repair after injury. Heart transplantation remains the ultimate approach to treating heart failure, but this is costly and excludes patients who are poor candidates for transplantation given their comorbidities, or for whom a donor organ is unavailable. Stem cell therapy represents the first realistic strategy for reversing the effects of what has until now been considered terminal heart damage. We will discuss potential sources of cardiac-specific stem cells, including mesenchymal, resident cardiac, embryonic, and induced pluripotent stem cells. We will consider efforts to enhance cardiac stem cell engraftment and survival in damaged myocardium, the incorporation of cardiac stem cells into tissue patches, and techniques for creating bioartificial myocardial tissue as well as whole organs. Finally, we will review progress being made in assessing functional improvement in animals and humans after cellular transplant.
Cell. 2012 Mar 16;148 (6):1242-57
22424232
Center for Human Genetic Research and Cardiovascular Research Center, Massachusetts General Hospital, Boston, MA 02114, USA; Department of Medicine, Harvard Medical School, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Cardiovascular disease encompasses a range of conditions extending from myocardial infarction to congenital heart disease, most of which are heritable. Enormous effort has been invested in understanding the genes and specific DNA sequence variants that are responsible for this heritability. Here, we review the lessons learned for monogenic and common, complex forms of cardiovascular disease. We also discuss key challenges that remain for gene discovery and for moving from genomic localization to mechanistic insights, with an emphasis on the impact of next-generation sequencing and the use of pluripotent human cells to understand the mechanism by which genetic variation contributes to disease.
Hum Mol Genet. 2012 Feb 27;:
22371266
Human Gene Sciences Center, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan.
Cleft palate, the most frequent congenital craniofacial birth defect, is a multifactorial condition induced by the interaction of genetic and environmental factors. In addition to complete cleft palate, a large number of human cases involve soft palate cleft and submucosal cleft palate. However, the etiology of these forms of cleft palate has not been well understood. T-box transcriptional factor (Tbx) family of transcriptional factors has distinct roles in a wide range of embryonic differentiation or response pathways. Here, we show that genetic disruption of Tbx1, a major candidate gene for the human congenital disorder 22q11.2 deletion syndrome (Velo-cardio-facial/DiGeorge syndrome), led to abnormal epithelial adhesion between the palate and mandible in mouse, resulting in various forms of cleft palate similar to human conditions. We found that hyperproliferative epithelium failed to undergo complete differentiation in Tbx1-null mice (Tbx1(-/-)). Inactivation of Tbx1 specifically in the keratinocyte lineage (Tbx1(KCKO)) resulted in an incomplete cleft palate confined to the anterior region of the palate. Interestingly, Tbx1 overexpression resulted in decreased cell growth and promoted cell cycle arrest in MCF7 epithelial cells. These findings suggest that Tbx1 regulates the balance between proliferation and differentiation of keratinocytes and is essential for palatal fusion and oral mucosal differentiation. The impaired adhesion-separation of the oral epithelium together with compromised palatal mesenchymal growth is an underlying cause for various forms of cleft palate phenotypes in Tbx1(-/-) mice. Our present study reveals new pathogenesis of incomplete and submucous cleft palate during mammalian palatogenesis.
N Engl J Med. 2011 Dec 10;:
22149959
Amit C Nathwani,
Edward G D Tuddenham,
Savita Rangarajan,
Cecilia Rosales,
Jenny McIntosh,
David C Linch,
Pratima Chowdary,
Anne Riddell,
Arnulfo Jaquilmac Pie,
Chris Harrington,
James O'Beirne,
Keith Smith,
John Pasi,
Bertil Glader,
Pradip Rustagi,
Catherine Y C Ng,
Mark A Kay,
Junfang Zhou,
Yunyu Spence,
Christopher L Morton,
James Allay,
John Coleman,
Susan Sleep,
John M Cunningham,
Deokumar Srivastava,
Etiena Basner-Tschakarjan,
Federico Mingozzi,
Katherine A High,
John T Gray,
Ulrike M Reiss,
Arthur W Nienhuis,
Andrew M Davidoff
From the Department of Haematology, University College London Cancer Institute (A.C.N., C.R., J.M., D.C.L.); the Katharine Dormandy Haemophilia Centre and Thrombosis Unit (A.C.N., E.G.D.T., P.C., A.R., A.J.P., C.H.) and the Liver Unit (J.O.), Royal Free National Health Service (NHS) Trust; NHS Blood and Transplant (A.C.N., C.R., J.M., K.S.); and the Centre for Haematology, Barts and the London, Queen Mary's School of Medicine (J.P.)- all in London; Basingstoke and North Hampshire NHS Foundation Trust, Basingstoke, United Kingdom (S.R.); the Stanford University School of Medicine, Palo Alto, CA (B.G., P.R., M.A.K.); the Departments of Surgery (C.Y.C.N., J.Z., Y.S., C.L.M., A.M.D.), Biostatistics (D.S.), and Hematology (J.T.G., U.M.R., A.W.N.), St. Jude Children's Research Hospital; and Children's GMP (J.A., J.C., S.S.)- both in Memphis, TN; the Department of Pediatrics, University of Chicago, Chicago (J.M.C.); the Center for Cellular and Molecular Therapeutics at Children's Hospital of Philadelphia, Philadelphia (E.B.-T., F.M., K.A.H.); and Howard Hughes Medical Institute, Chevy Chase, MD (K.A.H.).
Background Hemophilia B, an X-linked disorder, is ideally suited for gene therapy. We investigated the use of a new gene therapy in patients with the disorder. Methods We infused a single dose of a serotype-8-pseudotyped, self-complementary adenovirus-associated virus (AAV) vector expressing a codon-optimized human factor IX (FIX) transgene (scAAV2/8-LP1-hFIXco) in a peripheral vein in six patients with severe hemophilia B (FIX activity,<1% of normal values). Study participants were enrolled sequentially in one of three cohorts (given a high, intermediate, or low dose of vector), with two participants in each group. Vector was administered without immunosuppressive therapy, and participants were followed for 6 to 16 months. Results AAV-mediated expression of FIX at 2 to 11% of normal levels was observed in all participants. Four of the six discontinued FIX prophylaxis and remained free of spontaneous hemorrhage; in the other two, the interval between prophylactic injections was increased. Of the two participants who received the high dose of vector, one had a transient, asymptomatic elevation of serum aminotransferase levels, which was associated with the detection of AAV8-capsid-specific T cells in the peripheral blood; the other had a slight increase in liver-enzyme levels, the cause of which was less clear. Each of these two participants received a short course of glucocorticoid therapy, which rapidly normalized aminotransferase levels and maintained FIX levels in the range of 3 to 11% of normal values. Conclusions Peripheral-vein infusion of scAAV2/8-LP1-hFIXco resulted in FIX transgene expression at levels sufficient to improve the bleeding phenotype, with few side effects. Although immune-mediated clearance of AAV-transduced hepatocytes remains a concern, this process may be controlled with a short course of glucocorticoids without loss of transgene expression.(Funded by the Medical Research Council and others; ClinicalTrials.gov number, NCT00979238 .).
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