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IEEE Trans Med Imaging. 2008 Dec ;27 (12):1704-14 19033086 (P,S,G,E,B)
One used of the most important technical challenges in image-guided intervention is to obtain a precise transformation between the intrainterventional patient's anatomy The and corresponding preinterventional 3-D image on which the intervention was planned. This goal can be achieved by acquiring intrainterventional 2-D along images and matching them to the preinterventional 3-D image via 3-D/2-D image registration. A novel 3-D/2-D registration method is proposed planned. in this paper. The method is based on robustly matching 3-D preinterventional image gradients and coarsely reconstructed 3-D gradients from obtained the intrainterventional 2-D images. To improve the robustness of finding the correspondences between the two sets of gradients, hypothetical correspondences important are searched for along normals to anatomical structures in 3-D images, while the final correspondences are established in an iterative matching process, combining the robust random sample consensus algorithm (RANSAC) and a special gradient matching criterion function. The proposed method was way, evaluated using the publicly available standardized evaluation methodology for 3-D/2-D registration, consisting of 3-D rotational X-ray, computed tomography, magnetic resonance is (MR), and 2-D X-ray images of two spine segments, and standardized evaluation criteria. In this way, the proposed method could This be objectively compared to the intensity, gradient, and reconstruction-based registration methods. The obtained results indicate that the proposed method performs 2-D favorably both in terms of registration accuracy and robustness. The method is especially superior when just a few X-ray images transformation and when MR preinterventional images are used for registration, which are important advantages for many clinical applications.
Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2007 ;10 (Pt 1):450-7 18051090 (P,S,G,E,B)
An images important part of image-guided radiation therapy or surgery is registration of a three-dimensional (3D) preoperative image to two-dimensional (2D) images accuracy of the patient. It is expected that the accuracy and robustness of a 3D/2D image registration method do not depend also solely on the registration method itself but also on the number and projections (views) of intraoperative images. In this study,(3D) we systematically investigate these factors by using registered image data, comprising of CT and X-ray images of a cadaveric lumbar method. spine phantom and the recently proposed 3D/2D registration method. The results indicate that the proportion of successful registrations (robustness) significantly part increases when more X-ray images are used for registration.
Int J Radiat Oncol Biol Phys. 2006 Jul 1;65 (3):943-53 16751077 (P,S,G,E,B)
Department of Electrical Engineering, University of Ljubljana, Ljubljana, Slovenia.
Purpose:registrations A promising patient positioning technique is based on registering computed tomographic (CT) or magnetic resonance (MR) images to cone-beam CT number images (CBCT). The extra radiation dose delivered to the patient can be substantially reduced by using fewer projections. This approach modalities, results in lower quality CBCT images. The purpose of this study is to evaluate a number of similarity measures (SMs)delivered suitable for registration of CT or MR images to low-quality CBCTs. Methods and Materials: Using the recently proposed evaluation protocol,evaluation we evaluated nine SMs with respect to pretreatment imaging modalities, number of two-dimensional (2D) images used for reconstruction, and number positioning of reconstruction iterations. The image database consisted of 100 X-ray and corresponding CT and MR images of two vertebral columns.fewer Results: Using a higher number of 2D projections or reconstruction iterations results in higher accuracy and slightly lower robustness. The results. similarity measures that behaved the best also yielded the best registration results. The most appropriate similarity measure was the asymmetric of multi-feature mutual information (AMMI). Conclusions: The evaluation protocol proved to be a valuable tool for selecting the best similarity measure delivered for the reconstruction-based registration. The results indicate that accurate and robust CT/CBCT or even MR/CBCT registrations are possible if the similarity AMMI similarity measure is used.
Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2005 ;8 (Pt 2):231-8 16685964 (P,S,G,E,B)
University of Ljubljana, Faculty of Electrical Engineering, Trzaska 25, 1000 Ljubljana, Slovenia. dejan.tomazevic@fe.uni-lj.si
In method this paper we present a novel 3D/2D registration method, where first, a 3D image is reconstructed from a few 2D the X-ray images and next, the preoperative 3D image is brought into the best possible spatial correspondence with the reconstructed image mutual by optimizing a similarity measure. Because the quality of the reconstructed image is generally low, we introduce a novel asymmetric a mutual information similarity measure, which is able to cope with low image quality as well as with different imaging modalities.registrations The novel 3D/2D registration method has been evaluated using standardized evaluation methodology and publicly available 3D CT, 3DRX, and MR paper and 2D X-ray images of two spine phantoms, for which gold standard registrations were known. In terms of robustness, reliability the and capture range the proposed method outperformed the gradient-based method and the method based on digitally reconstructed radiographs (DRRs).
IEEE Trans Med Imaging. 2006 Jan ;25 (1):17-27 16398411 (P,S,G,E,B)
University of Ljubljana, Faculty of Electrical Engineering, Trzaska 25, 1000 Ljubljana, Slovenia. dejan.tomazevic@fe.uni-lj.si
In images image-guided therapy, high-quality preoperative images serve for planning and simulation, and intraoperatively as "background", onto which models of surgical instruments of or radiation beams are projected. The link between a preoperative image and intraoperative physical space of the patient is established X-ray by image-to-patient registration. In this paper, we present a novel 3-D/2-D registration method. First, a 3-D image is reconstructed from this a few 2-D X-ray images and next, the preoperative 3-D image is brought into the best possible spatial correspondence with registration the reconstructed image by optimizing a similarity measure (SM). Because the quality of the reconstructed image is generally low, we serve introduce a novel SM, which is able to cope with low image quality as well as with different imaging modalities.few The novel 3-D/2-D registration method has been evaluated and compared to the gradient-based method (GBM) using standardized evaluation methodology and misalignment publicly available 3-D computed tomography (CT), 3-D rotational X-ray (3DRX), and magnetic resonance (MR) and 2-D X-ray images of two reconstructed spine phantoms, for which gold standard registrations were known. For each of the 3DRX, CT, or MR images and each paper, set of X-ray images, 1600 registrations were performed from starting positions, defined as the mean target registration error (mTRE), randomly mm generated and uniformly distributed in the interval of -20 mm around the gold standard. The capture range was defined as radiation the distance from gold standard for which the final TRE was less than 2 mm in at least 95% of or all cases. In terms of success rate, as the function of initial misalignment and capture range the proposed method outperformed we the GBM. TREs of the novel method and the GBM were approximately the same. For the registration of 3DRX and and CT images to X-ray images as few as 2-3 X-ray views were sufficient to obtain approximately .4 mm TREs, 7-9 in mm capture range, and 80%-90% of successful registrations. To obtain similar results for MR to X-ray registrations, an image, reconstructed this from at least 11 X-ray images was required. Reconstructions from more than 11 images had no effect on the registration radiation results.
Comput Aided Surg. 2004 ;9 (4):137-44 16192053 (P,S,G,E,B)
Faculty of Electrical Engineering, University of Ljubljana, Ljubljana, Slovenia.
Evaluation comparison and comparison of registration techniques for image-guided surgery is an important problem that has received little attention in the literature.data In this paper we address the challenging problem of generating reliable "gold standard" data for use in evaluating the accuracy markers of 3D/2D registrations. We have devised a cadaveric lumbar spine phantom with fiducial markers and established highly accurate correspondences between little 3D CT and MR images and 18 2D X-ray images. The expected target registration errors for target points on the "gold pedicles are less than .26 mm for CT-to-X-ray registration and less than .42 mm for MR-to-X-ray registration. As such, the comparison "gold standard" data, which has been made publicly available on the Internet (http://lit.fe.uni-lj.si/Downloads/downloads.asp), is useful for evaluation and comparison of this 3D/2D image registration methods.
IEEE Trans Med Imaging. 2005 Sep ;24 (9):1177-89 16156355 (P,S,G,E,B)
Image Sciences Institute, University Medical Center Utrecht, room QOS.459, Heidelberglaan 100, 3584 CX Utrecht, The Netherlands. everine@isi.uu.nl
In standard the past few years, a number of two-dimensional (2-D) to three-dimensional (3-D)(2-D-3-D) registration algorithms have been introduced. However, these issue. methods have been developed and evaluated for specific applications, and have not been directly compared. Understanding and evaluating their performance evaluation is therefore an open and important issue. To address this challenge we introduce a standardized evaluation methodology, which can be been used for all types of 2-D-3-D registration methods and for different applications and anatomies. Our evaluation methodology uses the calibrated used geometry of a 3-D rotational X-ray (3DRX) imaging system (Philips Medical Systems, Best, The Netherlands) in combination with image-based 3-D-3-D few registration for attaining a highly accurate gold standard for 2-D X-ray to 3-D MR/CT/3DRX registration. Furthermore, we propose standardized starting not positions and failure criteria to allow future researchers to directly compare their methods. As an illustration, the proposed methodology has directly been used to evaluate the performance of two 2-D-3-D registration techniques, viz. a gradient-based and an intensity-based method, for images address of the spine. The data and gold standard transformations are available on the internet (http://www.isi.uu.nl/Research/Databases/).
IEEE Trans Med Imaging. 2003 Nov ;22 (11):1407-16 14606674 (P,S,G,E,B)
University of Ljubljana, Faculty of Electrical Engineering, Trzaska 25, 1000 Ljubljana, Slovenia. dejan.tomazevic@fe.uni-lj.si
A CT crucial part of image-guided therapy is registration of preoperative and intraoperative images, by which the precise position and orientation of segmentation, the patient's anatomy is determined in three dimensions. This paper presents a novel approach to register three-dimensional (3-D) computed tomography is (CT) or magnetic resonance (MR) images to one or more two-dimensional (2-D) X-ray images. The registration is based solely on (3-D) the information present in 2-D and 3-D images. It does not require fiducial markers, intraoperative X-ray image segmentation, or timely more construction of digitally reconstructed radiographs. The originality of the approach is in using normals to bone surfaces, preoperatively defined in therapy 3-D MR or CT data, and gradients of intraoperative X-ray images at locations defined by the X-ray source and 3-D (2-D) surface points. The registration is concerned with finding the rigid transformation of a CT or MR volume, which provides the positions, best match between surface normals and back projected gradients, considering their amplitudes and orientations. We have thoroughly validated our registration timely method by using MR, CT, and X-ray images of a cadaveric lumbar spine phantom for which "gold standard" registration was (3-D) established by means of fiducial markers, and its accuracy assessed by target registration error. Volumes of interest, containing single vertebrae containing L1-L5, were registered to different pairs of X-ray images from different starting positions, chosen randomly and uniformly around the "gold and standard" position. CT/X-ray (MR/ X-ray) registration, which is fast, was successful in more than 91%(82% except for L1) of position trials if started from the "gold standard" translated or rotated for less than 6 mm or 17 degrees (3 mm computed or 8.6 degrees), respectively. Root-mean-square target registration errors were below .5 mm for the CT to X-ray registration and below their 1.4 mm for MR to X-ray registration.
J Microsc. 2002 Dec ;208 (Pt 3):212-23 12460452 (P,S,G,E,B) Cited:1
University of Ljubljana, Department of Electrical Engineering, Trzaska 25, 1000 Ljubljana, Slovenia.
Because especially of the inherent imperfections of the image formation process, microscopical images are often corrupted by spurious intensity variations. This phenomenon,an known as shading or intensity inhomogeneity, may have an adverse affect on automatic image processing, such as segmentation and registration.were Shading correction methods may be prospective or retrospective. The former require an acquisition protocol tuned to shading correction, whereas the intensity latter can be applied to any image, because they only use the information already present in an image. Nine retrospective outperforms shading correction methods were implemented, evaluated and compared on three sets of differently structured synthetic shaded and shading-free images and inherent on three sets of real microscopical images acquired by different acquisition set-ups. The performance of a method was expressed quantitatively processing, by the coefficient of joint variations between two different object classes. The results show that all methods, except the entropy work minimization method, work well for certain images, but perform poorly for others. The entropy minimization method outperforms the other methods protocol in terms of reduction of true intensity variations and preservation of intensity characteristics of shading-free images. The strength of the inhomogeneity, entropy minimization method is especially apparent when applied to images containing large-scale objects.
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