Genetic Engineering :: methods
Latest Paper:
Department of Biochemisty and Molecular Biology, Shanxi Medical University, Taiyuan 030001, China.
OBJECTIVE: To explore the conditions for high expression of anti-HBsAg scFv A-15 in E. coli, increase the production of the scFv in the culture medium. METHODS: By changing induction occasion, concentration of inductor IPTG and induction time, influence of various conditions on expression of anti-HBsAg scFv A-15 was analyzed through ELISA. In addition, the effects of sucrose, glycine and Triton X-100 at different concentrations on the scFv excretion into culture medium was evaluation. RESULTS: The optimal expression conditions were as follows: the induction was started after culturing for 4 h, the concentration of IPTG was 0.5 mmol/L, and the induction lasted for 8 h. The scFv affinity in culture medium with 0.3 mol/L sucrose, 2% glycine, 1% Triton X-100, 16.78-fold higher, respectively than that without the three chemicals. The final yield of anti-HBsAg scFv A-15 was estimated to be 7.4 mg/L. CONCLUSION: The conditions for production of anti-HBsAg scFv A-15 were optimized, which provides a practical method for more efficient production of the scFv in E. coli for further studying structure and function.
Mesh-terms: Culture Media :: metabolism; Escherichia coli :: genetics; Escherichia coli :: metabolism; Gene Expression; Genetic Engineering :: methods; Hepatitis Antibodies :: genetics; Hepatitis Antibodies :: metabolism; Hepatitis B Surface Antigens :: genetics; Hepatitis B Surface Antigens :: immunology; Humans; Immunoglobulin Variable Region :: genetics; Immunoglobulin Variable Region :: metabolism; Protein Transport; Recombinant Proteins :: genetics; Recombinant Proteins :: metabolism;
Most cited papers:
Mesh-terms: Base Sequence; Cloning, Molecular; Coliphages :: genetics; DNA, Recombinant :: metabolism; DNA, Viral :: genetics; Escherichia coli :: genetics; Genes, Structural; Genes, Viral; Genetic Engineering :: methods; Genetic Vectors; Nucleic Acid Hybridization; Plasmids; Support, Non-U.S. Gov't; Support, U.S. Gov't, Non-P.H.S. ; Viral Proteins :: genetics;
The one-step gene disruption techniques described here are versatile in that a disruption can be made simply by the appropriate cloning experiment. The resultant chromosomal insertion is nonreverting and contains a genetically linked marker. Detailed knowledge of the restriction map of a fragment is not necessary. It is even possible to "probe" a fragment that is unmapped for genetic functions by constructing a series of insertions and testing each one for its phenotype.
Mesh-terms: Base Composition; Base Sequence; Cloning, Molecular; DNA :: analysis; DNA Restriction Enzymes; DNA, Fungal :: genetics; Genes, Structural; Genetic Engineering :: methods; Mutation; Plasmids; Saccharomyces cerevisiae :: genetics; Support, Non-U.S. Gov't; Support, U.S. Gov't, Non-P.H.S. ; Support, U.S. Gov't, P.H.S. ;
Department of Immunology, Mayo Clinic, Rochester, MN 55905.
Overlap extension represents a new approach to genetic engineering. Complementary oligodeoxyribonucleotide (oligo) primers and the polymerase chain reaction are used to generate two DNA fragments having overlapping ends. These fragments are combined in a subsequent 'fusion' reaction in which the overlapping ends anneal, allowing the 3' overlap of each strand to serve as a primer for the 3' extension of the complementary strand. The resulting fusion product is amplified further by PCR. Specific alterations in the nucleotide (nt) sequence can be introduced by incorporating nucleotide changes into the overlapping oligo primers. Using this technique of site-directed mutagenesis, three variants of a mouse major histocompatibility complex class-I gene have been generated, cloned and analyzed. Screening of mutant clones revealed at least a 98% efficiency of mutagenesis. All clones sequenced contained the desired mutations, and a low frequency of random substitution estimated to occur at approx. 1 in 4000 nt was detected. This method represents a significant improvement over standard methods of site-directed mutagenesis because it is much faster, simpler and approaches 100% efficiency in the generation of mutant product.
Mesh-terms: Amino Acid Sequence; Animals; DNA, Recombinant; DNA-Directed DNA Polymerase; Exons; Gene Amplification; Genes, MHC Class I; Genes, Synthetic; Genetic Engineering :: methods; Mice; Molecular Sequence Data; Mutation; Oligodeoxyribonucleotides :: chemical synthesis; Oligodeoxyribonucleotides :: genetics; Support, Non-U.S. Gov't; Support, U.S. Gov't, P.H.S. ; Taq Polymerase;
Mesh-terms: Cloning, Molecular; DNA, Bacterial :: genetics; Escherichia coli :: enzymology; Escherichia coli :: genetics; Galactosidases :: genetics; Genes, Bacterial; Genes, Structural; Genetic Engineering :: methods; Genetic Vectors; Indicators and Reagents; Lac Operon; Plasmids; Saccharomyces cerevisiae :: genetics; beta-Galactosidase :: genetics;
In this paper, we describe a 3.8-kb molecular construct that we have used to disrupt yeast genes. The construct consists of a functional yeast URA3 gene flanked by 1.1-kb direct repeats of a bacterial sequence. It is straightforward to insert the 3.8-kb segment into a cloned target gene of interest and then introduce the resulting disruption into the yeast genome by integrative transformation. An appropriate DNA fragment containing the disruption plus flanking homology can be obtained by restriction enzyme digestion. After introducing such fragments into yeast by transformation, stable integrants can be isolated by selection for Ura+. The important feature of this construct that makes it especially useful is that recombination between the flanking direct repeats occurs at a high frequency (10(-4)) in vegetatively grown cultures. After excision, only one copy of the repeat sequence remains behind. Thus in the resulting strain, the Ura+ selection can be used again, either to disrupt a second gene in similar fashion or for another purpose.
Hepatitis Viruses Section, National Institute of Allergy and Infectious Diseases, Bethesda, MD 20892.
We have developed a simple, one-step procedure for the preparation of competent Escherichia coli that uses a transformation and storage solution [TSS; 1 x TSS is LB broth containing 10%(wt/vol) polyethylene glycol, 5%(vol/vol) dimethyl sulfoxide, and 50 mM Mg2+ at pH 6.5]. Cells are mixed with an equal volume of ice-cold 2 x TSS and are immediately ready for use. Genetic transformation is equally simple: plasmid DNA is added and the cells are incubated for 5-60 min at 4 degrees C. A heat pulse is not necessary and the incubation time at 4 degrees C is not crucial, so there are no critical timing steps in the transformation procedure. Transformed bacteria are grown and selected by standard methods. Thus, this procedure eliminates the centrifugation, washing, and long-term incubation steps of current methods. Although cells taken early in the growth cycle (OD600 0.3-0.4) yield the highest transformation efficiencies (10(7)-10(8) transformants per micrograms of plasmid DNA), cells harvested at other stages in the growth cycle (including stationary phase) are capable of undergoing transformation (10(5)-10(7) transformants per micrograms of DNA). For long-term storage of competent cells, bacteria can be frozen in TSS without addition of other components. Our procedure represents a simple and convenient method for the preparation, transformation, and storage of competent bacterial cells.
We have developed a general method for introducing cloned genes into mammalian cells that affords substantial benefits over current technology. It is simple, rapid, and applicable to many (perhaps all) cell types, including those that are refractory to traditional transfection procedures. The method involves exposure of a suspension of cells and cloned DNA to a high-voltage electric discharge. In a model application of this transfection procedure, we have studied the expression of cloned human and mouse Ig kappa genes stably introduced into mouse pre-B cells and fibroblasts. We find that there is a B-cell-specific enhancer-activator region in the J-C intron of the human kappa gene that is necessary for efficient transcription of the cloned gene in mouse pre-B lymphocytes. This suggests that both the DNA element and the proteins required for its regulatory activity have been highly conserved in evolution and that these elements operate at the pre-B-cell stage of immunocyte development, a stage that precedes productive kappa gene rearrangement.
Mesh-terms: Animals; B-Lymphocytes :: physiology; Base Sequence; Electricity; Enhancer Elements (Genetics) ; Evolution; Fibroblasts :: physiology; Gene Expression Regulation; Genes, Regulator; Genes, Structural; Genetic Engineering :: methods; Human; Immunoglobulins, Light-Chain :: genetics; Immunoglobulins, kappa-Chain :: genetics; Mice; Support, Non-U.S. Gov't; Support, U.S. Gov't, P.H.S. ; Transformation, Genetic;
The essential role of hippocampal CA1 NMDA receptor-dependent synaptic plasticity in spatial memory.
We have produced a mouse strain in which the deletion of the NMDAR1 gene is restricted to the CA1 pyramidal cells of the hippocampus by using a new and general method that allows CA1-restricted gene knockout. The mutant mice grow into adulthood without obvious abnormalities. Adult mice lack NMDA receptor-mediated synaptic currents and long-term potentiation in the CA1 synapses and exhibit impaired spatial memory but unimpaired nonspatial learning. Our results strongly suggest that activity-dependent modifications of CA1 synapses, mediated by NMDA receptors, play an essential role in the acquisition of spatial memories.
Mesh-terms: Animals; Behavior, Animal :: physiology; Dentate Gyrus :: physiology; Genetic Engineering :: methods; Genetic Vectors; Hippocampus :: physiology; In Situ Hybridization; Long-Term Potentiation; Memory :: physiology; Mice; Mice, Knockout; Neuronal Plasticity :: physiology; Receptors, N-Methyl-D-Aspartate :: physiology; Support, Non-U.S. Gov't; Support, U.S. Gov't, P.H.S. ; Synaptic Transmission;
Krannert Institute of Cardiology, Indiana University School of Medicine, Indianapolis 46202-4800, USA.
This study describes a simple approach to generate relatively pure cultures of cardiomyocytes from differentiating murine embryonic stem (ES) cells. A fusion gene consisting of the alpha-cardiac myosin heavy chain promoter and a cDNA encoding aminoglycoside phosphotransferase was stably transfected into pluripotent ES cells. The resulting cell lines were differentiated in vitro and subjected to G418 selection. Immunocytological and ultrastructural analyses demonstrated that the selected cardiomyocyte cultures (> 99% pure) were highly differentiated. G418 selected cardiomyocytes were tested for their ability to form grafts in the hearts of adult dystrophic mice. The fate of the engrafted cells was monitored by antidystrophin immunohistology, as well as by PCR analysis with primers specific for the myosin heavy chain-aminoglycoside phosphotransferase transgene. Both analyses revealed the presence of ES-derived cardiomyocyte grafts for as long as 7 wk after implantation, the latest time point analyzed. These studies indicate that a simple genetic manipulation can be used to select essentially pure cultures of cardiomyocytes from differentiating ES cells. Moreover, the resulting cardiomyocytes are suitable for the formation of intracardiac grafts. This selection approach should be applicable to all ES-derived cell lineages.
Mesh-terms: Animals; Base Sequence; Biological Markers; Cell Differentiation :: genetics; Genetic Engineering :: methods; Gentamicins :: pharmacology; Kanamycin Kinase; Mice; Molecular Sequence Data; Myocardium :: cytology; Myocardium :: ultrastructure; Myosins :: genetics; Phosphotransferases (Alcohol Group Acceptor):: genetics; Promoter Regions (Genetics) ; Selection (Genetics) ; Stem Cells :: cytology; Support, Non-U.S. Gov't; Support, U.S. Gov't, P.H.S. ; Tissue Transplantation :: methods;
